BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912316
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27080.1 | Symbols: NRT1.6 | nitrate transporter 1.6 | chr1:... 1256 0.0
> AT1G27080.1 | Symbols: NRT1.6 | nitrate transporter 1.6 | chr1:9400664-9403789
FORWARD LENGTH=1731
Length=1731
Score = 1256 bits (680), Expect = 0.0
Identities = 799/858 (93%), Gaps = 2/858 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGTTGTTGAGAATCGGAAAATTTTGCCAGAGCAAAAACGTGGAGGCTGGAGAGCC 60
|||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1 ATGGGAGTTGTTGAGAATCGGAAAATTTTGCCAGAGAAAAAACTTGGAGGCTGGAGAGCC 60
Query 61 ATTACGTTCATCCTAGGAAATGAGACGTTGGAGAAGTTAGGATCGATGGGAGTATCAGCT 120
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ATTACGTTCATCCTAGGTAATGAGACGTTGGAGAAGTTAGGATCGATTGGAGTATCAGCA 120
Query 121 AATTTTATGGTGTATTTGAGGAATGTGTTTCACATGGAGCCAGTAGAAGCTTCCAATGTC 180
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 121 AATTTTATGTTGTATTTGAGGAATGTGTTTCACATGGAGCCAGTAGAAGCTTTTAACGTA 180
Query 181 TACTACTTGTGGATGGGTCTCACTAACTTTGCTCCACTCCTCGGAGCATTGATCTCTGAC 240
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 181 TACTACTTGTGGATGGGTCTCACTAACTTTGCTCCACTCCTCGGCGCATTAATCTCCGAC 240
Query 241 GCTTACATTGGCCGCTTCAAGACCATCGCTTATGCATCCTTCTTCTCCATTCTCGGACTA 300
|| ||||||||||| ||||||||||||||||| |||||| ||||||| ||||| ||||||
Sbjct 241 GCCTACATTGGCCGTTTCAAGACCATCGCTTACGCATCCCTCTTCTCAATTCTAGGACTA 300
Query 301 ATGACGGTCACACTCACAGCCTGCCTGCCTCAACTCCACCCACCACCGTGCAACAACCCT 360
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGACGGTGACACTCACCGCCTGCCTGCCTCAACTCCACCCACCACCGTGCAACAACCCT 360
Query 361 CGTCCAGACGAATGCGACGACCCAAACAAACTCCAGCTCGGGATTTTGTTCCTCGGTCTT 420
| |||||||||||||||||| || ||||| ||||||||||||||| | |||||||||||
Sbjct 361 CATCCAGACGAATGCGACGATCCGAACAAGCTCCAGCTCGGGATTCTATTCCTCGGTCTC 420
Query 421 GGCTTTCTCTCCATCGGTAGCGGCGGGATCAGGCCTTGCAGCATCCCATTCGGAGTTGAC 480
|||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 421 GGCTTTCTCTCCATCGGTAGCGGCGGAATCCGGCCTTGCAGCATTCCATTCGGAGTTGAT 480
Query 481 CAGTTTGACCAACGAACAGAGCAAGGCCTTAAAGGAATGGCTAGTTTCTTTAATTGGTAC 540
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 481 CAGTTTGACCAACGAACAGAGCAAGGCCTTAAAGGAGTGGCCAGTTTCTTTAATTGGTAC 540
Query 541 TACTTGACCTTAACCATGGTTCTCATCTTTTCGCATACCGTGGTGGTCTACTTACAAACA 600
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 541 TACTTGACCTTAACTATGGTTCTCATCTTTTCGCATACCGTTGTGGTCTACTTACAGAC- 599
Query 601 T-TCAGTTGGGTCATCGGGTTCAGCATCCCGACCGGTTTAATGGCTTGTGCGGTGGTTCT 659
| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct 600 TGTCAGTTGGGTCATCGGGTTTAGCATCCCGACTAGTTTAATGGCTTGTGCAGTGGTTCT 659
Query 660 GTTCTTTGTCGGTATGCGGTTTTACGTGTATGTCAAACCCCAAGGTAGTGTATTCTCTGG 719
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 660 GTTCTTTGTCGGTATGCGGTTTTACGTATATGTCAAACCGGAAGGTAGTGTATTCTCTGG 719
Query 720 TATTGCTCGGGTCATCGTGGCAGCTCGTAAGAAACGGAACCTCGAGATTCCACCAGTGGA 779
||||||||||||||||||||||||||||||||||||| ||||| | ||| | | |||||
Sbjct 720 TATTGCTCGGGTCATCGTGGCAGCTCGTAAGAAACGGGACCTCAAAATTTCGCTTGTGGA 779
Query 780 TGATGGGACGGTGGAGTATTATGAGCCGCCGGTGAAACATGGCGTGTTATCCAAGTTACC 839
|||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 CGATGGGACTGAGGAGTATTATGAGCCGCCGGTGAAACCTGGCGTGTTATCCAAGTTACC 839
Query 840 TCTAACTGACCAATTCAA 857
||| ||||||||||||||
Sbjct 840 TCTTACTGACCAATTCAA 857
Score = 1153 bits (624), Expect = 0.0
Identities = 710/752 (94%), Gaps = 4/752 (1%)
Strand=Plus/Plus
Query 854 TCAAAGTCGTTCCGGTTTGGTCTGCTGGAATAATCTCAATCGTTGCAATGACCACACAAG 913
||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 971 TCAGAGTTGTTCCGGTTTGGTCTGCTGGAATAATTTCAATCGTTGCAATGACCACGCAAG 1030
Query 914 CAACTTTCATAGTCTTTCAAGCTACGAAAATGGATCGACACATGGGTCCACACTTTGAGA 973
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1031 CAACTTTCATGGTCTTTCAAGCTACAAAAATGGATCGACACATGGGTCCACACTTTGAGA 1090
Query 974 TCCCGGCTGCTTCCATAGCAGTCATTTCTTACATCACTATAGGCATTTGGGTGCCTATCT 1033
||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TCCCGGCCGCCTCCATAACCGTCATTTCTTACATCACTATAGGCATTTGGGTGCCTATCT 1150
Query 1034 ACGAACGCCTCTTAGTCCCGTTCCTATGGCGAATCCGAAAGTTCAGGTTCACTCTCCTTC 1093
|||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1151 ACGAACACCTCTTAGTCCCGTTCCTTTGGCGAATGAGAAAGTTCAGGGTCACTCTCCTTC 1210
Query 1094 AACGGATGGGGATAGGGATCGTCTTCGCCATTCTCTCCATGTTCACTGCAGGGATTGTAG 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1211 AACGGATGGGGATAGGGATCGTCTTCGCCATTCTCTCCATGTTCACTGCAGGGTTTGTAG 1270
Query 1154 AGGGAGTGAGGCAGACACGGGCTACTGAAATTACTCAAATGTCAGTCTTTTGGCTGGCTT 1213
|||||||||||| |||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1271 AGGGAGTGAGGCGGACACGGGCTACTGAAATGACTCAAATGTCGGTGTTTTGGCTGGCTT 1330
Query 1214 TGCCACTGATTCTGATGGGGCTCTGCGAGTCATTTAATTTCATTGGACAGATCGAGTTCT 1273
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1331 TGCCACTGATTCTGATGGGGCTCTGCGAGTCATTTAATTTCATTGGACTGATCGAGTTCT 1390
Query 1274 TCAACAGTCAATTTCCAGAGCACATGAGAAGCATAGCGAATTCGCTATTTCCACTCTCAT 1333
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 TCAACAGTCAGTTTCCAGAGCACATGAGAAGCATAGCGAATTCGCTATTTCCACTCTCAT 1450
Query 1334 TTGCTGCCGCTAATTATCTGAGCAGTCTGCTGGTGACCACCGTGCATAAAGTTTCAGGCA 1393
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1451 TTGCTGCAGCTAATTATCTGAGCAGTCTGCTGGTGACCACCGTGCATAAAGTCTCAGGCA 1510
Query 1394 CAAAAGACCAGCCGGACTGGCTGAACAAGGACCTTGATAGAGGGAAATTGGATTACTTCT 1453
|||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1511 CAAAAGACCACCCTGACTGGCTGAACAAGGACCTTGATAGAGGGAAGTTGGACTACTTCT 1570
Query 1454 ACTATCTGATTGCCTGTTT-GGGTGTGGTTAATCTTATGTATTTCTGGTACTGTGCCCGA 1512
|||||||||||||| |||| |||||||||||| ||| ||||||||||||||||||||| |
Sbjct 1571 ACTATCTGATTGCC-GTTTTGGGTGTGGTTAACCTTGTGTATTTCTGGTACTGTGCCC-A 1628
Query 1513 -AGCTACCAGTATAAAGCCGGTTCACAAATTGAAGATTTCAAGGAGGAGAAGCCTTTTCT 1571
|| |||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||
Sbjct 1629 TAGATACCAGTATAAAGCCGGTTCGCAAATTGAAGATTTCAATGAGGAGAAGTCTCTTCT 1688
Query 1572 AGACATAGAACCAAACAAGAGACATGATCAAT 1603
|||||| ||||||||| ||||||| |||||||
Sbjct 1689 AGACATCGAACCAAACCAGAGACACGATCAAT 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5