BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912319
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27050.1 | Symbols: ATHB54, HB54 | homeobox protein 54 | chr... 883 0.0
AT1G27045.1 | Symbols: | Homeobox-leucine zipper protein famil... 414 9e-115
> AT1G27050.1 | Symbols: ATHB54, HB54 | homeobox protein 54 | chr1:9393690-9394592
FORWARD LENGTH=818
Length=818
Score = 883 bits (478), Expect = 0.0
Identities = 581/631 (92%), Gaps = 6/631 (1%)
Strand=Plus/Plus
Query 747 AAGTACGAGTATGAGCCGCAAGAGAGATAAACCCTACACATATCGTCACACACCGGCGCG 806
|||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 7 AAGTTCGAGTATGAGCCGCAAGAGAGATAAACCCTACACAAACCGTCACACACCGGCGCG 66
Query 807 AATTTCGAAACGCCGGCGACCATGGGCGCCTCCGTCATTTGAACACGATGAAATCATCGA 866
||||||||||||||||||||||||||||||| |||||| || |||||||| || |||||
Sbjct 67 AATTTCGAAACGCCGGCGACCATGGGCGCCTTCGTCATCGGAGCACGATGAGATTATCGA 126
Query 867 CAAACCAATTACCAAACCTCCGCCGCCACCGGCGCTGGTAGTTACAGGG-CTTCCCGCCA 925
|||||| || |||||||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 127 CAAACCGATCACCAAACCTCCGCCGCCACCGGCGTTGGTAGTTAT-GGGACTTCCCGCCA 185
Query 926 ACTGTTCAGTCCTGGAGCTAAAATCTCGATTCGAGATCTACGGTTCAATCTCCAGAATCC 985
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 186 ACTGTTCAGTTCTGGAGCTAAAATCTCGATTCGAGATCTACGGTTCAATCTCCCGAATCC 245
Query 986 GAATCGATAAAGACGGATTTGGCTCCGTTTCGTATCGAACCACCGAGTCAGCAGAAGCTG 1045
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
Sbjct 246 GAATCCATAAAGACGGAATTGGCTCCGTTTCGTATCGAACCGCCGAGTCAGCAGAAGCCG 305
Query 1046 CGATTGCTGGTAGTCACGAGCCTTCTTTCGGTATCTCCATCGATTCCAAAAAGTTGGTGG 1105
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 306 CCATTGCTGGTAGTCACGAGCCTTCTTTCGGTATCTCCATCGATTCCAAAAAGTTGGAGG 365
Query 1106 TGGGTTGGGCGACGGATCCGTTGGTGAAGTGTAGGGAAGGTGTGACGGTTGGAGAAGGAA 1165
||| ||||||||||||||| ||||||||||| | |||||||||||||| ||||||||||
Sbjct 366 TGGTTTGGGCGACGGATCCATTGGTGAAGTGGAAGGAAGGTGTGACGGCGGGAGAAGGAA 425
Query 1166 AGGATAAAACGTTGTCGTCTTCGTCGAAGCTGTTACGACCTGTGATGCCTTTGAGAAAAC 1225
|||| | ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 426 AGGAGAGAACGTCGTCGTTTTCGTCGAAGCTTTTACGACCTGTGATGCCTTTGAGAAAAC 485
Query 1226 ACGGGAGAAGCAGTAGATTAGCATCAGCTATTGTTAATCCGAGAAGTGATAATACTAACG 1285
| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 486 ATGGGAGAAGCAGTAGGTTAGCGTCAGCTATTGTTAATCCGAGAAGTGATAATACTAAAG 545
Query 1286 GAATTAGTGGAGGTGGCGGAGTTTTGA-CTCCGGCGACGATAAAG-GAAGTTAAACAGAG 1343
|||||||||||| ||| || | | | | |||||||||||| || | ||||||||||||||
Sbjct 546 GAATTAGTGGAGATGGAGG-GATATCATCTCCGGCGACGACAA-GTGAAGTTAAACAGAG 603
Query 1344 AGATATAGTAACCTACGACGATATCCTTTAA 1374
| ||||||||||||||||||||||| |||||
Sbjct 604 AAATATAGTAACCTACGACGATATCGTTTAA 634
> AT1G27045.1 | Symbols: | Homeobox-leucine zipper protein family
| chr1:9391609-9393019 FORWARD LENGTH=1100
Length=1100
Score = 414 bits (224), Expect = 9e-115
Identities = 266/285 (93%), Gaps = 8/285 (3%)
Strand=Plus/Plus
Query 85 AACCAAAGCCATAAGTTTCCTTCTTCTTGCTTTCCTCCGAGCTCTCACTCTGCTTTTTAT 144
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 342 AACCATAGCCATAAGTTTCCTTCTTCTTGTTTTCCTCCGAGCTCTCACTCTGCTTTTTAT 401
Query 145 GGATCTAGCTCAATGATCAACACAGAGACTACCAGTACCACTATGGACGAAGAAGACGTT 204
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 402 GGATCTAGCTCAATGATCAACACAGAGACT----G--CAACTATGGACGAAGAAGACGTA 455
Query 205 TGTGAGAGCTACATGATGCGTGAGATAACCAAGAAACGGAAGCTAACACC-AGTCCAAGT 263
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 456 TGTGAGAGCTACATGATGCGTGAGATAACCAAGAAACGGAAGCTAACACCGA-TCCAATT 514
Query 264 GCGTTTACTAGAGGAGAGTTTCGAAGAAGAGAAAAGACTTGAACCAGACAGGAAACTCTG 323
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 515 GCGTTTACTAGAGGAGAGTTTCGAAGAAGAGAAAAGACTCGAACCAGACAGGAAACTCTG 574
Query 324 CCTGGCAGAGAAGCTAGGGCTCCAGCCGAGCCAAGTCGCTGTCTG 368
|| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 575 GCTAGCCGAGAAGCTAGGGCTGCAGCCAAGCCAAGTCGCTGTCTG 619
Score = 335 bits (181), Expect = 8e-91
Identities = 201/211 (95%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 539 AGGTCGCTCTTCTCAAAGAGAAGCTGCGAATGCAAGAGAATCTTGAAGCTCAGTCTATTG 598
|||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 751 AGGTCGATCTTCTCAAAGAGAAGCTGAAAATGCAAGAGAATCTTGAAACTCAGTCTATTG 810
Query 599 AGAGGAACAGACTTGGGGAAGAAGATAGTTGGGTGAAAAGCGATAACACGCAGTACAGTG 658
||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 811 AGAGGAAAAGACTTGGGGAAGAAGGTAGTTCGGTGAAAAGCGATAACACGCAGTACAGTG 870
Query 659 AAGAAGAAGATTTGGAGAATCAATACAGTTTCCCAGAGCTTGCAGTTCTCGGATTTTGTT 718
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 871 AAGAAGAAGGTTTGGAGAATCAATACAGTTTCCCGGAGCTTGCAGTTCTCGGATTTTATT 930
Query 719 ATGATCCAACCTTAACTGCTTCAAATCTAAG 749
|||||||||||||||||||||||||||||||
Sbjct 931 ATGATCCAACCTTAACTGCTTCAAATCTAAG 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5