BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912320
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27040.1 | Symbols: | Major facilitator superfamily protein... 1280 0.0
AT1G69850.1 | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transpo... 499 3e-140
> AT1G27040.1 | Symbols: | Major facilitator superfamily protein
| chr1:9386784-9390042 REVERSE LENGTH=1837
Length=1837
Score = 1280 bits (693), Expect = 0.0
Identities = 780/823 (95%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGTAGAAGTGCAAGGTGATGTCTCCAAATGGGAAGGCTACGCTGACTGGAGGAAC 60
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 25 ATGGAAGTAGAAATGCATGGTGATGTCTCCAAATGGGAAGGCTACGCTGACTGGAGAAAC 84
Query 61 AGAGCCGCCGTGAAAGGCCGTCACGGCGGCATGCTTGCCGCCTCCTTCGTCTTGGCGGTG 120
| ||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 85 AAAGCCGCCTTGAGAGGCCGTCACGGCGGAATGCTCGCCGCCTCCTTCGTCTTGGCGGTG 144
Query 121 GAGATATTGGAGAATCTAGCGTTTTTAGCGAACGCAAGCAACTTGGTGTTGTATCTGAAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 145 GAGATATTGGAGAATCTAGCGTTTTTAGCGAACGCAAGCAACTTGGTGTTGTATCTCAAG 204
Query 181 AACTTCATGCACATGTCTCTAGCGAGATCGTCGAGTGAAGTGACCACTTTCATGGCCACC 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 205 AACTTCATGCACATGTCTCTAGCCAGATCGTCGAGTGAAGTGACCACTTTCATGGCCACA 264
Query 241 GCCTTCCTTCTCGCTCTCCTCGGTGGCTTCCTCGCCGACGCCTTCTTCTCCACATTCGTC 300
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 265 GCCTTCCTTCTCGCTCTCCTCGGTGGCTTCCTTGCTGACGCCTTCTTCTCCACATTCGTC 324
Query 301 ATCTTCCTCGTCTCCGCCTCCATTGAGTTTCTGGGACTTATCCTGCTCACAATCCAAGCC 360
|| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 325 ATTTTCCTCATCTCCGCCTCCATCGAGTTTCTGGGACTTATCCTGCTCACAATCCAAGCC 384
Query 361 CGTCGTCCGTCTTTAATGCCGCCTCCATGCAAGAGCTCTGCGGCGTTACCATGCGAGGTC 420
|| |||||||| ||||||||||| ||||||||||||||||| || || | ||||||||||
Sbjct 385 CGGCGTCCGTCCTTAATGCCGCCGCCATGCAAGAGCTCTGCCGCATTGCGATGCGAGGTC 444
Query 421 GTTGGTGGTTCAAAGGCGGCGTTTCTGTTCGTGGGATTATATCTAGTGTCTCTAGGAGTC 480
||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 445 GTTGGTGGTTCGAAGGCGGCGTTTCTGTTTGTGGGACTATATCTAGTGTCTCTAGGAATC 504
Query 481 GGAGGGATAAAAGGGTCATTGCCGTCACACGGAGCAGAGCAATTCGACGAGAGCACGCCT 540
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 505 GGAGGGATAAAAGGGTCATTACCGTCACACGGAGCAGAGCAATTCGACGAGGGCACGCCC 564
Query 541 AAAGGTCGAAAACAGAGATCCACCTTCTTCAACTACTATGTGTTCTGTCTCTCATGTGGA 600
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 565 AAAGGTCGAAAACAAAGATCCACATTCTTCAACTACTATGTGTTCTGTCTCTCATGTGGA 624
Query 601 GCACTTGTGGCCGTGACGTTCGTTGTCTGGCTCGAGGACAACAAAGGCTGGGAGTGGGGA 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 625 GCACTTGTGGCCGTGACGTTCGTTGTCTGGATCGAGGACAACAAAGGCTGGGAGTGGGGA 684
Query 661 TTTGGAGTCTCCACCATCTCCATATTTCTCTCCATTATCGTCTTTCTCTTAGGTTCGAGG 720
|||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct 685 TTTGGAGTCTCCACCATCTCTATATTTCTCTCCATTCTTGTCTTTCTATTAGGTTCGAGG 744
Query 721 TTTTATAAGaaa-aaaaTCCCTCGTGGAAGTCCTCTCACCACAATCTTGAAGGTTCTTCT 779
|||||||| ||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 745 TTTTATAA-AAACAAAATCCCTCGTGGTAGTCCTCTTACCACAATCTTTAAGGTTCTTCT 803
Query 780 CGCAGCTTCCATAGTTGGTTGCTCGAGTAAAACTTCGAGTAAT 822
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 804 CGCAGCTTCCATAGTTAGTTGCTCGAGTAAAACTTCGAGTAAT 846
Score = 1240 bits (671), Expect = 0.0
Identities = 811/880 (92%), Gaps = 4/880 (0%)
Strand=Plus/Plus
Query 852 TAATCACTTTGCTTCTAGAGAAGATCAATCAGAACAAGGAA-AAAAGACGCCTTCTCAGT 910
|||||||||| |||| ||||||| ||||||||||| | ||| ||||||||||||||||||
Sbjct 843 TAATCACTTTACTTCCAGAGAAGTTCAATCAGAAC-ATGAAGAAAAGACGCCTTCTCAGT 901
Query 911 CACTAACTAATAGCTTGAGATGTCTAAACAGAGCGATAGAGGGCAAAACACACTATATAT 970
|||| || |||||||||| ||||||||||| ||| |||||||| ||||||||| |||| |
Sbjct 902 CACTTACCAATAGCTTGACATGTCTAAACAAAGCAATAGAGGGGAAAACACACCATATTT 961
Query 971 GGCTCGAATGCACAGTCCAACAAGTGGAAGACGTGAAGATTGTCCTGAAAATGCTTCCGA 1030
||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |
Sbjct 962 GGCTCGAATGCACGGTCCAACAAGTAGAAGACGTGAAGATTGTGCTAAAAATGCTTCCAA 1021
Query 1031 TATTTGGTTGCACCATAATGCTCAATTGCTGCTTAGCTCAACTCTCTACTTACTCTGTCC 1090
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1022 TATTTGGTTGCACCATAATGCTCAATTGCTGCTTAGCTCAGCTTTCTACTTACTCTGTCC 1081
Query 1091 ACCAAGCTGCTACGATGAACAGAAAGATCATTAACTTTAATATTCCTCCAGCTTCCTTAC 1150
|||||||||| |||||||||||||||||| ||||||| ||| ||||| ||||||| ||||
Sbjct 1082 ACCAAGCTGCAACGATGAACAGAAAGATCGTTAACTTCAATGTTCCTTCAGCTTCTTTAC 1141
Query 1151 CGGTTTTTCCAGTCGTATTCATGCTAATGCTTGCTCCGGCCTATGACCATCTGATTATCC 1210
|||||||||| || || |||||||| || |||||||| |||||||||||||||||||||
Sbjct 1142 CGGTTTTTCCGGTTGTTTTCATGCTGATTCTTGCTCCAACCTATGACCATCTGATTATCC 1201
Query 1211 CATTCGCTAGAAAGGTAACCAAATCCGAAATGGGTATCACTCACTTGCAAAGAATCGGTG 1270
||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1202 CATTCGCAAGAAAAGTAACCAAATCCGAAATTGGTATCACTCATTTGCAAAGAATCGGTG 1261
Query 1271 TAGGCTTAGTCCTTTCGATATTAGCAATGGCAGTGGCTGCATTAGTCGAGTTAAAGCGGA 1330
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1262 TAGGCTTAGTCCTTTCGATAGTAGCAATGGCAGTGGCTGCTTTAGTCGAGTTAAAGCGGA 1321
Query 1331 AGCAAGTAGCTAGAGAAGCTGGATTGCTTGACTCTAAAGAAACCTTACCAATCACTTTCC 1390
||||||| ||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
Sbjct 1322 AGCAAGTGGCTAGAGAAGCTGGATTACTTGACTCTGAAGAAACTTTACCAATCACTTTTC 1381
Query 1391 TATGGATTGCGT-TTCAGTATCTATTTCTAGGGTCAGCTGATCTATTCACATTAGCTGGA 1449
| |||||||| | |||||||||| |||||||| ||||||||||| |||||| ||||||||
Sbjct 1382 TGTGGATTGC-TCTTCAGTATCTGTTTCTAGGATCAGCTGATCTGTTCACACTAGCTGGA 1440
Query 1450 TTGCTGGAGTTTTTCTTCACAGAAGCACCTTCTTCTATGAGATCATTAGCTACATCGCTC 1509
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1441 TTGCTAGAGTTTTTCTTCACAGAAGCACCTTCTTCTATGAGATCATTGGCTACATCGCTC 1500
Query 1510 TCATGGGCTTCTTTAGCATTGGGGTATTATCTAAGCTCGGTGATGGTTCCGATAGTGAAC 1569
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1501 TCATGGGCTTCTTTGGCATTAGGGTATTATCTAAGCTCGGTGATGGTGCCGATAGTGAAC 1560
Query 1570 AGTGTCACTGAGAGTGCCGGACAAAGCCCATGGCTTGGAGAAAAACTTAACCGTAGCAGC 1629
|| || ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1561 AGAGTAACTAAGAGTGCTGGACAAAGCCCATGGCTTGGAGAAAAACTTAACCGTAACAGA 1620
Query 1630 CTAGACTTGTTTTACTGGCTCATGTGTGTCATGAGTGTTGTTAACTTCTTGCATTATCTC 1689
|||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1621 CTAGACTTGTTTTATTGGCTCATGTGTGTCCTAAGTGTTGTTAACTTCTTGCACTATCTC 1680
Query 1690 TTCTGGGCAAAGCGTTATAAGTACATCTCAACTGGTTCAA 1729
||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1681 TTCTGGGCAAAGCGTTACAAGTATATCTCAACTGGTTCAA 1720
> AT1G69850.1 | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter
1:2 | chr1:26296676-26300472 REVERSE LENGTH=2092
Length=2092
Score = 499 bits (270), Expect = 3e-140
Identities = 628/796 (79%), Gaps = 43/796 (5%)
Strand=Plus/Plus
Query 10 GAAGTGCAAGGTGATGTCTCCAA-ATGGGAAGGCTACGCTGACTGGAGGAACAGAGCCGC 68
|||||| ||| || |||| ||| ||||||||||||||| || ||||| |||||||| ||
Sbjct 69 GAAGTGGAAGAAGAGGTCT-CAAGATGGGAAGGCTACGCCGATTGGAGAAACAGAGCAGC 127
Query 69 CGTGAAAGGCCGTCACGGCGGCATGCTTGCCGCCTCCTTCGTCTTGGCGGTGGAGATATT 128
|||||||||||||||||| |||||||| |||||||| |||||||| | ||||||||||||
Sbjct 128 CGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCGTCTTAGTGGTGGAGATATT 187
Query 129 GGAGAATCTAGCGTTTTTAGCGAACGCAAGCAA-CTTGGTGTTGTATCTGAAGA-ACTTC 186
||||||||||||| ||| ||||| || || || ||| ||| | || || |||| | | |
Sbjct 188 AGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTT-GTGCTATACCT-AAGAGAATAC 245
Query 187 ATGCACATGTCTCTAGCGAGATCGTCGAGTGAAGTGACCACTTTCATGGCCACCGCCTTC 246
||||||||||||| | | | |||| | | ||| || |||| |||||||| ||| || ||
Sbjct 246 ATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATTTCATGGGCACAGCTTTT 305
Query 247 CTTCTCGCTCTCCTCGGTGGCTTCCTCGCCGACGCCTTCTTCTCCACATTCGTC--ATCT 304
|| || |||||||||||||| |||||| ||||||| ||||||||||| || || ||||
Sbjct 306 CTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCTCCAC-TT-TTCAAATCT 363
Query 305 TCCTCGTCTCCGCCTCCATTGAGTTTCTGGGACTT-ATCCTGCTCACAATCCAAGC-CCG 362
||||| |||| || ||||| |||||| ||||| || ||| | |||||||| ||||| | |
Sbjct 364 TCCTCATCTCAGCTTCCATCGAGTTTTTGGGA-TTGATCATACTCACAATTCAAGCTCGG 422
Query 363 TCGTCCGTCTTTAATGCCGCC-TCCATGCAAGAGCTCTGCGGCGTTACCATGCGAGGTCG 421
| || || |||||||| || | | ||| | || || | | | |||| || | |
Sbjct 423 AC-ACCATCCTTAATGCCTCCAT-CGTGCGATAG-TC--C--C---A-CATGTGAAGAAG 471
Query 422 TTG-GTGGTTCAAAGGCGGCGTTTCTGTTCGTGGGATTATATCTAGT-GTCTCTAGGAGT 479
|| ||||||| ||||| ||| | || |||||||| || || || || | || | || ||
Sbjct 472 -TGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAG-CTTTGGGTGT 529
Query 480 CGGAGGGATAAAAGGGTCATT-GCCGTCACACGGAGCAGAGCAATTCGACGAGAGCACGC 538
|||||||| ||||| ||||| | | || ||||||||||| || || || ||||| || |
Sbjct 530 GGGAGGGATCAAAGGTTCATTAG-CATCTCACGGAGCAGAACAGTTTGATGAGAGTACAC 588
Query 539 CTAAAGGTCGAAAACAGAGATCCACCTTCTTCAACTACTAT-GTGTTCTGTCTCT-CATG 596
|||||||||| ||||| || || || ||||| ||||||| | ||||| ||||| | | ||
Sbjct 589 CTAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACT-TCGTGTTTTGTCT-TGCTTG 646
Query 597 TGGAGCACTTGTGGCCGTGACGTTCGTTGTCTGGCTCGAGGACAACAAAGGCTGGGAGTG 656
||||||||| || || || ||||| || || ||| | || ||||||||||| ||||| ||
Sbjct 647 TGGAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATG 706
Query 657 GGGATTTGGAGTCTCCACCATCTCCATAT-TTC-TCTCCATTATCGTCTTTCTCT-TAGG 713
|||||| || || || ||||| | | ||| ||| |||| ||| || ||||||||| | ||
Sbjct 707 GGGATTCGGTGTTTCTACCAT-TGC-TATCTTCGTCTCTATTCTCATCTTTCTCTCT-GG 763
Query 714 TTCGAGGTTTTATAAGaa-aaaaaTCCCTCGTGGAAGTCCTCTCACCACAATCTTGAAGG 772
|| || ||||||| ||| || | ||| | ||||||||||||||||||||||||||||||
Sbjct 764 ATCAAGATTTTATAGGAACAAGATTCCAT-GTGGAAGTCCTCTCACCACAATCTTGAAGG 822
Query 773 TTCTTCTCGCAGCTTC 788
||||||| || |||||
Sbjct 823 TTCTTCTTGCGGCTTC 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893132495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5