BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912336
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26911.1 | Symbols: | Pseudogene of AT1G66590; cox19 family... 331 2e-90
> AT1G26911.1 | Symbols: | Pseudogene of AT1G66590; cox19 family
protein | chr1:9323740-9324200 FORWARD LENGTH=281
Length=281
Score = 331 bits (179), Expect = 2e-90
Identities = 253/284 (89%), Gaps = 23/284 (8%)
Strand=Plus/Plus
Query 10 GGTGGAGCGTTTGGAGGAAACAGAGGATTGAGACCAATACCACCAGAAAAGGGTATTTTT 69
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTGGAGTGTTTGGAGGGAACAGAGGATTGAGACCAATACCACCAGAAAAGGGTATTTTA 60
Query 70 CCTTTGGATCATTTGCATCAATGCGACACGGAGAAGAAAGGTTATCTCGACTGTCTCAAG 129
||||||||||||||||||||||| | || ||||||||||||||||| |||||||||||
Sbjct 61 CCTTTGGATCATTTGCATCAATGTG--AC-GAGAAGAAAGGTTATCTTAACTGTCTCAAG 117
Query 130 TCTTCTGGTCATAAGTCTGAGCAATGTAGGCATCTTTCAAAGACGTATCTCGAGTGTCGG 189
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTACTGGTCATAAGTCTGAGCAATGTAGGCATCTTTCAAAGACGTATCTCGAGTGTCGG 177
Query 190 ATGGC-AA---AG-------A---A----TTTGATGGCAAAGCAAGATATGTCTGAGCTG 231
||||| || || | | |||||||||||||||||||||||||||||||
Sbjct 178 ATGGCTAAGTCAGTCCTTTCATGCAGGAATTTGATGGCAAAGCAAGATATGTCTGAGCTG 237
Query 232 GGATTCAGTGGTG--TTACTGAACTGGATTCTATTGTGGAGAAA 273
||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 238 GGATTCAGTGGTGAATTACTGAACTGGATTCTACTGTGGAGAAA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12969079242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5