BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg912339 Length=549 Score E Sequences producing significant alignments: (Bits) Value AT1G26890.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 612 1e-174 AT1G22000.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 544 4e-154 > AT1G26890.1 | Symbols: | FBD, F-box and Leucine Rich Repeat domains containing protein | chr1:9317589-9319246 FORWARD LENGTH=1428 Length=1428 Score = 612 bits (331), Expect = 1e-174 Identities = 461/521 (88%), Gaps = 19/521 (4%) Strand=Plus/Plus Query 4 TCTTGCCTTAATGTGGC-ACGCATCGGCAATGTTCATAACCTCGATGACAAGTTGCTGAG 62 ||||||||| || | || | | ||||| |||||||||||| |||| ||||||| ||||| Sbjct 892 TCTTGCCTTCATATAGCAAAAC-TCGGCTATGTTCATAACCCCGATCACAAGTTTCTGAG 950 Query 63 ATCTCTTTCTTCTGTCATACATCTGTACTTGTGTTTGACTAAATCAATGGTTGC-TAGCT 121 |||||||||||||||||||||| ||||||||| |||||| || |||||||||| | | | Sbjct 951 ATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGTTGCGT-GGT 1009 Query 122 GTAACGCCATCAAGTTCTCTCGGCT-TATAGAGTTTTGCTTTT-TTCCAAGTTGTTAT-G 178 ||||| ||||||||||||||||||| | | ||||||| |||| ||||||| || | | Sbjct 1010 GTAACACCATCAAGTTCTCTCGGCTCT-TGGAGTTTT-ATTTTGTTCCAAGCAATT-TGG 1066 Query 179 TAGATTGGTTGGAACCACTTATGATATTT-CTTCAAATTTCTCCTAAACTAAAAACTCTT 237 ||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| |||| Sbjct 1067 TAGATTGGTTGGAACCACTTATG-TATTTGCTTCAAAATTCTCCTAAACTACAAATTCTT 1125 Query 238 ACGATTGACACTGA-T-TACGGGTGTCTCCCACCTTCGTGGAACCAGCCGAGTTCTTCTA 295 |||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||| Sbjct 1126 ACGATTGACACTGATTCTAC--GTGTCTCCCACCTTCATGGAACCAGCCGAGTTCTTCTA 1183 Query 296 C---TCCCGAATGCTTGTCATCTCATTTAGAGATCTTTGGGTGGAGAGGGTATCGAGGAA 352 | |||||||||||||| ||||||||| |||||||| ||||| |||| ||| |||||| Sbjct 1184 CTATTCCCGAATGCTTGTTGTCTCATTTACAGATCTTTAGGTGGGGAGGCTATGGAGGAA 1243 Query 353 GAGAAGATGCGAAACAACTATTGACATACATTCTCGCTAACTCAAAGTGTTTAAAGACAG 412 ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| || Sbjct 1244 GAGAAGATGAGAAATAACTAATGACATACATTCTCGCTAACTCAAAGTGTTTAAAGAGAG 1303 Query 413 TGGGGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTACAATCTA 472 ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 1304 TGGCGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAATGGAGTTAGAATCTA 1363 Query 473 TGCCTAGGAATTCAACATCATCCCAACTTCTAACCTCCTCC 513 |||||||||| ||||||||||| |||||||||||||||||| Sbjct 1364 TGCCTAGGAACTCAACATCATCTCAACTTCTAACCTCCTCC 1404 > AT1G22000.1 | Symbols: | FBD, F-box and Leucine Rich Repeat domains containing protein | chr1:7744189-7747785 FORWARD LENGTH=2504 Length=2504 Score = 544 bits (294), Expect = 4e-154 Identities = 451/523 (86%), Gaps = 26/523 (5%) Strand=Plus/Plus Query 1 ATGTCTTGCCTTAATGTGGCACGCATCGGCAATGTTCATAACCTCGATGACAAGTTGCTG 60 ||||||| |||| | | |||| |||| ||||||||| | ||| |||||| ||||| ||| Sbjct 847 ATGTCTTTCCTTGACGAGGCATTCATCAGCAATGTTCCTTACCCCGATGAAAAGTTTCTG 906 Query 61 AGATCTCTTTCTTCTGTCATACATCTGTACTT-GTGTTTGA-CTAAATCAATGGTTGCTA 118 ||||||||||||||||||| |||||| | ||| ||||| | | |||||||||||||| | Sbjct 907 AGATCTCTTTCTTCTGTCAAACATCTCTTCTTACTGTTT-AGC-AAATCAATGGTTGC-A 963 Query 119 -GCTGTAACGCCATCAAGTTCT-CTCGGCTTATAGAGTTTTGCTTTTTTCCAAGTT-GTT 175 ||||||||||||||||||||| || |||| |||||||||| ||||||||||| || ||| Sbjct 964 TGCTGTAACGCCATCAAGTTCTCCT-GGCTCATAGAGTTTTACTTTTTTCCAA-TTAGTT 1021 Query 176 AT-GTAGATTGGTTGGA-ACCACTTATGATATTT-CTTCAAATTTCTCCTAAACTAAAAA 232 | ||||||||||| || || |||||| | ||| ||||||| |||||||||||| |||| Sbjct 1022 -TGGTAGATTGGTT-GATGCCGCTTATG-TTTTTGCTTCAAAATTCTCCTAAACTTAAAA 1078 Query 233 CTCTTACGATTGACACTGA-TTACGGGTGTCTCCCACCTTCGTGGAACCAGCCGAGTTCT 291 ||| ||||||||||| ||| || || ||||||| ||| ||| |||||||||||||| | Sbjct 1079 CTCCTACGATTGACAATGACTT-CGAGTGTCTCTCACTTTCCTGGAACCAGCCGAG---T 1134 Query 292 TCTACTCCCGAATGCTTGTCATCTCATTTAGAGATCTTTGGGTGGAGAGGGTATCGAGGA 351 |||| ||||| |||||||| |||||| |||||| |||| |||||||||| ||| ||||| Sbjct 1135 TCTATTCCCGGATGCTTGTTGTCTCATCTAGAGACCTTTAGGTGGAGAGGCTATGGAGGA 1194 Query 352 AGAGAAGATGCGAAACAACTA-T--TGACATACATTCTCGCTAACTCAAAGTGTTTAAAG 408 ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1195 AGAGAAGATGCGAAAAAACTACTGATGACATACATTCTCGCTAACTCAAAGTGTTTAAAG 1254 Query 409 ACAGTGGGGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTACAA 468 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 1255 ACAGTGGAGATCTCCCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTAAAA 1314 Query 469 TCTATGCCTAGGAATTCAACA-TCATCCCAACTTCTAACCTCC 510 ||||||||||||| |||| || ||||| |||||||||| |||| Sbjct 1315 TCTATGCCTAGGATTTCA-CAATCATCTCAACTTCTAATCTCC 1356 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26322693028 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5