BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912339
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26890.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 612 1e-174
AT1G22000.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 544 4e-154
> AT1G26890.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr1:9317589-9319246 FORWARD LENGTH=1428
Length=1428
Score = 612 bits (331), Expect = 1e-174
Identities = 461/521 (88%), Gaps = 19/521 (4%)
Strand=Plus/Plus
Query 4 TCTTGCCTTAATGTGGC-ACGCATCGGCAATGTTCATAACCTCGATGACAAGTTGCTGAG 62
||||||||| || | || | | ||||| |||||||||||| |||| ||||||| |||||
Sbjct 892 TCTTGCCTTCATATAGCAAAAC-TCGGCTATGTTCATAACCCCGATCACAAGTTTCTGAG 950
Query 63 ATCTCTTTCTTCTGTCATACATCTGTACTTGTGTTTGACTAAATCAATGGTTGC-TAGCT 121
|||||||||||||||||||||| ||||||||| |||||| || |||||||||| | | |
Sbjct 951 ATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGTTGCGT-GGT 1009
Query 122 GTAACGCCATCAAGTTCTCTCGGCT-TATAGAGTTTTGCTTTT-TTCCAAGTTGTTAT-G 178
||||| ||||||||||||||||||| | | ||||||| |||| ||||||| || | |
Sbjct 1010 GTAACACCATCAAGTTCTCTCGGCTCT-TGGAGTTTT-ATTTTGTTCCAAGCAATT-TGG 1066
Query 179 TAGATTGGTTGGAACCACTTATGATATTT-CTTCAAATTTCTCCTAAACTAAAAACTCTT 237
||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| ||||
Sbjct 1067 TAGATTGGTTGGAACCACTTATG-TATTTGCTTCAAAATTCTCCTAAACTACAAATTCTT 1125
Query 238 ACGATTGACACTGA-T-TACGGGTGTCTCCCACCTTCGTGGAACCAGCCGAGTTCTTCTA 295
|||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1126 ACGATTGACACTGATTCTAC--GTGTCTCCCACCTTCATGGAACCAGCCGAGTTCTTCTA 1183
Query 296 C---TCCCGAATGCTTGTCATCTCATTTAGAGATCTTTGGGTGGAGAGGGTATCGAGGAA 352
| |||||||||||||| ||||||||| |||||||| ||||| |||| ||| ||||||
Sbjct 1184 CTATTCCCGAATGCTTGTTGTCTCATTTACAGATCTTTAGGTGGGGAGGCTATGGAGGAA 1243
Query 353 GAGAAGATGCGAAACAACTATTGACATACATTCTCGCTAACTCAAAGTGTTTAAAGACAG 412
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1244 GAGAAGATGAGAAATAACTAATGACATACATTCTCGCTAACTCAAAGTGTTTAAAGAGAG 1303
Query 413 TGGGGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTACAATCTA 472
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1304 TGGCGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAATGGAGTTAGAATCTA 1363
Query 473 TGCCTAGGAATTCAACATCATCCCAACTTCTAACCTCCTCC 513
|||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1364 TGCCTAGGAACTCAACATCATCTCAACTTCTAACCTCCTCC 1404
> AT1G22000.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr1:7744189-7747785 FORWARD LENGTH=2504
Length=2504
Score = 544 bits (294), Expect = 4e-154
Identities = 451/523 (86%), Gaps = 26/523 (5%)
Strand=Plus/Plus
Query 1 ATGTCTTGCCTTAATGTGGCACGCATCGGCAATGTTCATAACCTCGATGACAAGTTGCTG 60
||||||| |||| | | |||| |||| ||||||||| | ||| |||||| ||||| |||
Sbjct 847 ATGTCTTTCCTTGACGAGGCATTCATCAGCAATGTTCCTTACCCCGATGAAAAGTTTCTG 906
Query 61 AGATCTCTTTCTTCTGTCATACATCTGTACTT-GTGTTTGA-CTAAATCAATGGTTGCTA 118
||||||||||||||||||| |||||| | ||| ||||| | | |||||||||||||| |
Sbjct 907 AGATCTCTTTCTTCTGTCAAACATCTCTTCTTACTGTTT-AGC-AAATCAATGGTTGC-A 963
Query 119 -GCTGTAACGCCATCAAGTTCT-CTCGGCTTATAGAGTTTTGCTTTTTTCCAAGTT-GTT 175
||||||||||||||||||||| || |||| |||||||||| ||||||||||| || |||
Sbjct 964 TGCTGTAACGCCATCAAGTTCTCCT-GGCTCATAGAGTTTTACTTTTTTCCAA-TTAGTT 1021
Query 176 AT-GTAGATTGGTTGGA-ACCACTTATGATATTT-CTTCAAATTTCTCCTAAACTAAAAA 232
| ||||||||||| || || |||||| | ||| ||||||| |||||||||||| ||||
Sbjct 1022 -TGGTAGATTGGTT-GATGCCGCTTATG-TTTTTGCTTCAAAATTCTCCTAAACTTAAAA 1078
Query 233 CTCTTACGATTGACACTGA-TTACGGGTGTCTCCCACCTTCGTGGAACCAGCCGAGTTCT 291
||| ||||||||||| ||| || || ||||||| ||| ||| |||||||||||||| |
Sbjct 1079 CTCCTACGATTGACAATGACTT-CGAGTGTCTCTCACTTTCCTGGAACCAGCCGAG---T 1134
Query 292 TCTACTCCCGAATGCTTGTCATCTCATTTAGAGATCTTTGGGTGGAGAGGGTATCGAGGA 351
|||| ||||| |||||||| |||||| |||||| |||| |||||||||| ||| |||||
Sbjct 1135 TCTATTCCCGGATGCTTGTTGTCTCATCTAGAGACCTTTAGGTGGAGAGGCTATGGAGGA 1194
Query 352 AGAGAAGATGCGAAACAACTA-T--TGACATACATTCTCGCTAACTCAAAGTGTTTAAAG 408
||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1195 AGAGAAGATGCGAAAAAACTACTGATGACATACATTCTCGCTAACTCAAAGTGTTTAAAG 1254
Query 409 ACAGTGGGGATCTTTCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTACAA 468
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1255 ACAGTGGAGATCTCCCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTAAAA 1314
Query 469 TCTATGCCTAGGAATTCAACA-TCATCCCAACTTCTAACCTCC 510
||||||||||||| |||| || ||||| |||||||||| ||||
Sbjct 1315 TCTATGCCTAGGATTTCA-CAATCATCTCAACTTCTAATCTCC 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5