BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912348

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G32023.1 | Symbols:  | transposable element gene | chr3:1299...   220    6e-57


> AT3G32023.1 | Symbols:  | transposable element gene | chr3:12993299-12994435 
REVERSE LENGTH=1137
Length=1137

 Score =  220 bits (119),  Expect = 6e-57
 Identities = 171/195 (88%), Gaps = 8/195 (4%)
 Strand=Plus/Plus

Query  179  GGTTCAAAAATAACACTGAAGTATCAACACGAGTTAGAAAGATCATTGAAGGGTGTTTCA  238
            ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| 
Sbjct  324  GGTTCAAAAGTAACACTGAAGTATCAACACGTGTTAGAAAGATCATTGAAGGGTGCTTCC  383

Query  239  AAGGACCATGGTACAGCTGGAAAAGAGTGCCGCCGTTTTACAA-GAAGGCATGGTTTTCA  297
            |||||||||||||||||||||||||||| ||| ||| |||||| || | |||||||||||
Sbjct  384  AAGGACCATGGTACAGCTGGAAAAGAGTTCCGGCGTATTACAAAGA-GACATGGTTTTCA  442

Query  298  ACGTTTAAGGTTTG-CTTCAATTACAA-ATTTAATGT-GTATAATACTTTCATCCATTAT  354
            ||||||| |||| | ||||||||| || |||| || | | ||| || ||||||| |||||
Sbjct  443  ACGTTTATGGTT-GACTTCAATTA-AATATTTGATATTG-ATAGTATTTTCATCAATTAT  499

Query  355  TTTATTTATGTTTGA  369
            || ||||| ||||||
Sbjct  500  TTAATTTAAGTTTGA  514


 Score =  145 bits (78),  Expect = 3e-34
 Identities = 100/111 (90%), Gaps = 0/111 (0%)
 Strand=Plus/Plus

Query  71   CAAATTCACAGGCTGTAAATGTTGAACCAAATGAACAGAGAGAACAAGCTGCACCAGTAA  130
            |||||  ||| |||| |||| ||||| ||||||||||||||||||||||||| || || |
Sbjct  137  CAAATGAACAAGCTGCAAATATTGAAGCAAATGAACAGAGAGAACAAGCTGCGCCTGTCA  196

Query  131  TACGTGACATTCGACTTCTCCACCCCTTAAGAAGGAATGGAGCTAAATGGT  181
            |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct  197  TACGTGACATTCGAGTGCTCCACCCCTTAAGAAGGAATGGAGCTAAATGGT  247



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5