BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912353

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26820.1 | Symbols: RNS3 | ribonuclease 3 | chr1:9292446-929...   174    3e-43


> AT1G26820.1 | Symbols: RNS3 | ribonuclease 3 | chr1:9292446-9293784 
REVERSE LENGTH=1045
Length=1045

 Score =  174 bits (94),  Expect = 3e-43
 Identities = 107/113 (95%), Gaps = 1/113 (1%)
 Strand=Plus/Plus

Query  3    TTCTAGCGTTACAACAACTCTACGTA-AAAGTGTCGACCAGGATTTCGATTTCTTCTACT  61
            |||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||
Sbjct  82   TTCTAGCGTTACAACAACTCTACGTACAAAGTTTCGCCCAAGATTTCGATTTCTTCTACT  141

Query  62   TCGTTTTACAGTGGCCTGGAACTTATTGTGATTCAAGACATAGTTGTTGCTAT  114
            |||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  142  TCGTTTTACAGTGGCCTGGAGCGTATTGTGATTCAAGACATAGTTGTTGCTAT  194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5