BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912378
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26690.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1026 0.0
AT1G69460.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 529 1e-149
> AT1G26690.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr1:9224145-9225775 REVERSE LENGTH=892
Length=892
Score = 1026 bits (555), Expect = 0.0
Identities = 615/645 (95%), Gaps = 0/645 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCTCCAATCACTAAATCTCTGCACGATACTACTCTTCCTAGCGATTGCATCACAA 60
||| |||||| |||||| |||||||| || ||||||||||||||||||||| ||||||||
Sbjct 94 ATGTTTCTCCGATCACTCAATCTCTGTACAATACTACTCTTCCTAGCGATTTCATCACAA 153
Query 61 GTTTCTCAATCTCTCCACTTCGAATTGCAATCTGGTCGAACAAAATGTATCTCCGAAGAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 154 GTTTCTCAATCTCTCCACTTCGAATTGCAATCTGGTCGAACAAAATGTATATCGGAAGAC 213
Query 121 ATCAAAAGCAATTCAATGACCGTCGGGAAATACACCGTCGTTAACCCTAACGAAGCTCAT 180
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 214 ATAAAAAGCAATTCAATGACCGTCGGGAAGTACACCGTCGTTAACCCTAACGAAGCTCAT 273
Query 181 CCTTCTCCTCCATCTCACAAGATCTCTATCAGAGTGACATCGAGTTACGGTAACACGTAT 240
|||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 274 CCTTCTCCTCAATCTCACAAGATCTCCATCAGAGTGACATCGAGTTACGGGAACACGTAT 333
Query 241 CATCACGCGGAAGGTGTTGAATCGGGACAATTCGCGTTCACGGCGGTGGAGGCTGGAGAT 300
||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 334 CATCACGCGGAAGATGTAGAATCGGGACAATTCGCGTTCACGGCGGTGGAGTCTGGAGAT 393
Query 301 TATATGGCTTGTTTCACTGCTGTTGATCATAAACCTGAGGTTACATTGAGTATTGATTTT 360
|| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TACATGGCTTGTTACACAGCTGTTGATCATAAACCTGAGGTTACATTGAGTATTGATTTC 453
Query 361 GATTGGAGAACTGGTGTTCAATCTAAGAGTTGGAGTAGTGTAGCTAAGAAGAGCCAAGTC 420
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 454 GATTGGAGAACTGGTGTTCAATCTAAAAGCTGGAGTAGTGTTGCTAAGAAGAGCCAAGTC 513
Query 421 GAAGTTATGGAGTTTGATGTAAAAAGACTGATTGAAACCGTCAACTCTATTCATGAAGAG 480
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 514 GAAGTTATGGAGTTTGATGTAAAAAGACTTATTGAAACCGTCAATTCGATTCATGAAGAG 573
Query 481 ATGTTTTATCTCAGAGAAAGGGAAGAAGAGATGCAAAATCTGAACCGGGCTACAAACTCG 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 574 ATGTTTTATCTCAGAGAAAGGGAAGAAGAGATGCAGAATCTGAACCGGGCTACTAACTCG 633
Query 541 AAAATGGCGTGGTTGGGTTTCCTCTCTCTTTTCGTATGCTTAGGAGTCGCGGGAATGCAG 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AAAATGGCGTGGTTGAGTTTCCTCTCTCTTTTCGTATGCTTAGGAGTCGCGGGAATGCAG 693
Query 601 TTTTTGCATTTGAAGACGTTTTTCGAGAAGAAGAAAGTCATCTAA 645
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TTTGTGCATTTGAAGACGTTTTTCGAGAAGAAGAAAGTCATCTAA 738
> AT1G69460.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr1:26111809-26113243 REVERSE LENGTH=973
Length=973
Score = 529 bits (286), Expect = 1e-149
Identities = 536/655 (82%), Gaps = 24/655 (4%)
Strand=Plus/Plus
Query 1 ATGGTTCTCCAATCACTAAATCTCTGCACGATACTACT-CTTCCTAGCGA-TTGCATCA- 57
||| |||||||||| | ||| || || ||||| || || || ||||||| ||| |||
Sbjct 84 ATGTTTCTCCAATCGCAAAAACTATGGACGATGCTTCTAATT-CTAGCGATTTG-GTCAC 141
Query 58 CAAGTTTCTCAATCTCTCCACTTCGAAT-TGCAATCTGGTCGAACAAAATGTATCTCCGA 116
||| |||| || || || ||||||| || | || || ||||| ||||| |||||| ||||
Sbjct 142 CAA-TTTCACACTCGCTTCACTTCG-ATCTACACTCAGGTCGCACAAAGTGTATCGCCGA 199
Query 117 AGACATCAAAAGCAATTCAATGACCGTCGGGAAATACACCGTCGTTAACCCTAACGAAGC 176
|||||||||||||||||||||||| || || ||||||| | ||| ||| ||| ||||||
Sbjct 200 AGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCGATAATCCTCACGAAGG 259
Query 177 TCATCCTTCT-CCTCCATCTCACAAGATCTCTATCAGAG-TGACATCGAGTTACGGTAAC 234
||| ||| | || | | ||||||| || || ||| || |||| || | || |||||||
Sbjct 260 TCAAGCTT-TACCACAAACTCACAAAATTTCCGTCA-AGGTGACGTCTAATTCCGGTAAC 317
Query 235 ACGTATCATCACGCGGAAGGTGTTGAATCGGGACAATTCGCGTTCACGGCGGTGGAGGCT 294
| || |||||||||||| || || || ||||||||||| ||| |||| || || ||
Sbjct 318 AATTACCATCACGCGGAACAAGTAGATTCAGGACAATTCGCATTCTCGGCTGTTGAAGCA 377
Query 295 GGAGATTATATGGCTTGTTTCACTGCTGTTGATCATAAACCTGAGGTTACATTGAGTATT 354
|| ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 378 GGTGATTACATGGCTTGTTTCACTGCTGTTGATCATAAGCCTGAGGTTTCGTTGAGTATT 437
Query 355 GATTTTGATTGGA-GAACTGGTGTTCAATCTAAGAGTTGGAG-TAGTGTAGCTAAGAAGA 412
|| ||||| |||| || |||||||||||||||| || ||| | || ||| ||||||||||
Sbjct 438 GACTTTGAGTGGAAGA-CTGGTGTTCAATCTAAAAGCTGG-GCTAATGTTGCTAAGAAGA 495
Query 413 GCCAAGTCGAAGTTATGGAGTTTGATGTAAAAAGACTGATTGAAACCGTCAACTCTATTC 472
| ||||||||||||||||| ||||| ||||| || || |||| || || ||||| ||||
Sbjct 496 GTCAAGTCGAAGTTATGGAATTTGAAGTAAAGAGTCTTCTTGATACTGTTAACTCGATTC 555
Query 473 ATGAAGAGATGTTTTATCTCAGAGAAAGGGAAGAAGAGATGCAAAATCT-GAACCGGGCT 531
|||||||||||| |||||| ||||| |||||||||||||||||| | || ||||||| |
Sbjct 556 ATGAAGAGATGTATTATCTTAGAGATAGGGAAGAAGAGATGCAAGA-CTTGAACCGGTCC 614
Query 532 ACAAACTCGAAAATGGCGTGGTTGGGT-TTCCTCTC-TCTTTTCGTATGCTTAGGAGTCG 589
|| ||| | ||||||||||||||| || ||| |||| | ||||||| ||| ||||||| |
Sbjct 615 ACTAACACAAAAATGGCGTGGTTGAGTGTTC-TCTCGT-TTTTCGTCTGCATAGGAGTTG 672
Query 590 C-GGGAATGCAGTTTTTGCATTTGAAGACGTTTTTCGAGAAGAAGAAAGTCATCT 643
| |||| ||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 673 CAGGGA-TGCAGTTTTTGCACTTGAAGACGTTTTTCGAGAAGAAGAAGGTTATCT 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5