BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912397
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46230.1 | Symbols: | PIN domain-like family protein | chr2... 793 0.0
AT1G26530.1 | Symbols: | PIN domain-like family protein | chr1... 501 3e-141
> AT2G46230.1 | Symbols: | PIN domain-like family protein | chr2:18984199-18985959
REVERSE LENGTH=960
Length=960
Score = 793 bits (429), Expect = 0.0
Identities = 544/598 (91%), Gaps = 14/598 (2%)
Strand=Plus/Plus
Query 1 ATGGG-AAGATCAAAGAAACCTCAAAAGTTTGCTGTAATGAA-AAAATTGATAAGCCACA 58
||||| ||| ||||||||||||||||||||||||| |||| || | |||| |||||||
Sbjct 110 ATGGGAAAG-GCAAAGAAACCTCAAAAGTTTGCTGTCGTGAAGAAGA-TGATTAGCCACA 167
Query 59 AAGCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAAC 118
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 168 AAGCTTTGAAGCATTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAAC 227
Query 119 TTCCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG 178
||||||||||||| || ||||||||| ||||||||||||||||| ||||||||| ||||
Sbjct 228 TTCCGAGAAACGTACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGG 287
Query 179 TTCCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGA 238
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 288 TTCCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGA 347
Query 239 TTGATCTTGAGAAGGGAATGATG-GACTGTTTGTACGCAAAATGCACTCCTTGTATCACG 297
| ||||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||
Sbjct 348 TCGATCTTGAGAAGGGAATGA-GAGACTGTCTGTACGCAAATTGCACTCCTTGTATCACG 406
Query 298 GACTGTGTCATGGCTGAGCTGGAAAAGTTAGGTCAGAAGTATCGTGTAGCTCTAAGGATT 357
|| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 407 GATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTCAGAAGTATCGTGTAGCTCTAAGGATT 466
Query 358 GC-AAAGGATCCCCGA-TTTGAAAGACTACCTTGTGTACACAAAGGGACATATGCTGATG 415
|| ||| ||||| | | || ||||||||||||||| ||||||||||||||||||||||||
Sbjct 467 GCGAAA-GATCCTC-ACTTCGAAAGACTACCTTGTATACACAAAGGGACATATGCTGATG 524
Query 416 ACTGTCTCGTTGACAGAGTTACTCAGCATAAGTGCTTCATAGTAGCTACTTGTGATAGAG 475
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 525 ACTGTCTCGTTGACAGAGTTACTCAGCATAAATGCTTCATAGTGGCTACATGTGATAGAG 584
Query 476 ATCT-AAAGCGAAGGATTCGCAAGATTCCTGGTGTACCAATCATGTATGTGAC-ACGACG 533
| || ||||||||||||||| |||||||||||||| || |||||||||||||| | ||
Sbjct 585 A-CTTAAAGCGAAGGATTCGAAAGATTCCTGGTGTGCCCATCATGTATGTGACTAAT-CG 642
Query 534 CAAGTACTCAATAGAGAAGCTGCCTGAAGCAACAATCGGTGGAGCTCCAAGATACTGA 591
||||||||||||||||||| |||||||||| ||| | |||||||||||||| ||||||
Sbjct 643 CAAGTACTCAATAGAGAAGTTGCCTGAAGCTACACTTGGTGGAGCTCCAAGGTACTGA 700
> AT1G26530.1 | Symbols: | PIN domain-like family protein | chr1:9165360-9167490
FORWARD LENGTH=1259
Length=1259
Score = 501 bits (271), Expect = 3e-141
Identities = 294/304 (97%), Gaps = 6/304 (2%)
Strand=Plus/Plus
Query 1 ATGGGAA-GATCAAAGAAACCTCAAAAGTTTGCTGTAATGAA-AAAATTGATAAGCCACA 58
||||||| || |||||||||||||||||||||| |||||||| | | ||||||||||||
Sbjct 531 ATGGGAAGGA-CAAAGAAACCTCAAAAGTTTGCAGTAATGAAGATGA-TGATAAGCCACA 588
Query 59 AAGCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAAC 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AAGCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAAC 648
Query 119 TTCCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TTCCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG 708
Query 179 TTCCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TTCCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGA 768
Query 239 TTGATCTTGAGAAGGGAATGATGGACTGTTTGTACGCAAAATGCACTCCTTGTATCACGG 298
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 769 TTGATCTTGAGAAGGGAATGATGG--TGTTTGTACGCAAAATGCACTCCTTGTATTACGG 826
Query 299 ACTG 302
||||
Sbjct 827 ACTG 830
Score = 396 bits (214), Expect = 1e-109
Identities = 230/238 (97%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 354 GATTGCAAAGGATCCCCGATTTGAAAGACTACCTTGTGTACACAAAGGGACATATGCTGA 413
||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 830 GATTGCAAAAGATCCACGATTTGAAAGACTACCTTGTGTACTCAAAGGGACATATGCTGA 889
Query 414 TGACTGTCTCGTTGACAGAGTTACTCAGCATAAGTGCTTCATAGTAGCTACTTGTGATAG 473
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 890 TGACTGTCTTGTGGACAGAGTTACTCAGCATAAATGCTTCATAGTAGCTACTTGTGATAG 949
Query 474 AGATCTAAAGCGAAGGATTCGCAAGATTCCTGGTGTACCAATCATGTATGTGACACGACG 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 950 AGATCTAAAGCGAAGGATTCGCAAGATTCCTGGTGTACCAATCATGTATGTGACACAACG 1009
Query 534 CAAGTACTCAATAGAGAAGCTGCCTGAAGCAACAATCGGTGGAGCTCCAAGATACTGA 591
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CAAGTACTCAATAGAGAAACTGCCTGAAGCAACAATCGGTGGAGCTCCAAGATACTGA 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5