BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912406
Length=7617
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30990.2 | Symbols: | ARM repeat superfamily protein | chr4... 1131 0.0
> AT4G30990.2 | Symbols: | ARM repeat superfamily protein | chr4:15084098-15097920
FORWARD LENGTH=8101
Length=8101
Score = 1131 bits (612), Expect = 0.0
Identities = 1169/1425 (82%), Gaps = 89/1425 (6%)
Strand=Plus/Plus
Query 4253 CAG-CCTCAATACTTTGCCTAGAGGCTTCTGCTCACTCTG-ACAT-GATCAAAGAGGTTA 4309
||| ||||||||||||||| ||| ||| | |||||||||| | | || |||||||| |
Sbjct 4529 CAGTCCTCAATACTTTGCCGAGAAGCTCCAGCTCACTCTGAATTTGGA--AAAGAGGTCA 4586
Query 4310 CAAAA-TCTGATGGAAGCTGGACTGGAGATCGTGTATTGTGGATTAT-AAATAAGTTTAT 4367
|||| |||||| ||||||||| |||||||||||| |||| ||| | | | || |||||
Sbjct 4587 -AAAACGCTGATGTAAGCTGGACAGGAGATCGTGTACTGTGCATTTTGAGA-AATTTTAT 4644
Query 4368 TTTGAAACACATTGGAGATACATTAAATAGA---GGAATTTCTATTGGAAAGG-GGGAGA 4423
||||||||||||||||||| || |||| ||| || | || || | ||||| | ||
Sbjct 4645 TTTGAAACACATTGGAGATGCAATAAACAGAGGGGGCA-TTATAAT--AAAGGAATG-GA 4700
Query 4424 TTCTTTTGATACGCAAAATGGTG-GCAACACTTCCAGATGCCGGAAATCTTTCTGCATTC 4482
|||||||||||||| | |||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 4701 TTCTTTTGATACGCGAGATGGTGACCAA-ACTTCCAGATGCCGCAAATCTTTCTGCATTC 4759
Query 4483 AGACCTTTATGCTCAGAAGACGATGAA-GTGGATTTCTTTAAAAAC-ATT-TTTAGCATT 4539
|||||| ||||||| |||||||| ||| || ||||| ||| ||| | ||| || | ||||
Sbjct 4760 AGACCTCTATGCTCTGAAGACGA-GAATGTAGATTT-TTTTAAAGCTATTGTTCA-CATT 4816
Query 4540 CAGGCACACCGTAGAGCAAGGGCAGTTAAACGTTTCACAAAG-GTGGTCAAAGATAGCAG 4598
||||||||||||||||| |||||| || |||||||| || ||||| |||||||||||
Sbjct 4817 CAGGCACACCGTAGAGCTAGGGCAATTTCACGTTTCA-GTAGTGTGGTTAAAGATAGCAG 4875
Query 4599 TCTGCCTGAGGGAGTACTGAGAAGACTTTTGGTCTCAGtttttttCAACATGTTGCTTGA 4658
|||||||||||||||| |||||| |||||||||||| || |||||||| ||||| || ||
Sbjct 4876 TCTGCCTGAGGGAGTAGTGAGAAAACTTTTGGTCTCGGTCTTTTTCAATATGTTACTCGA 4935
Query 4659 TGGACAAGATGAAAAAGGGAAAAATGTCCA-AGATGCATGCAAAGAAGCCCTTGCATCTG 4717
|||||||||| ||||| || ||||| || | ||||||||| ||||||||||||||||
Sbjct 4936 AGGACAAGATGGAAAAGATAATAATGT-CAGAAATGCATGCACAGAAGCCCTTGCATCTA 4994
Query 4718 TATCTGGTCATATGAGTTGGA-AGTCGTACTACGCCCTATTGAATCGGTGTTTCC-ATGA 4775
|||||| |||||||||||||| | |||||||| || || ||||||||||||||| | ||
Sbjct 4995 TATCTGCTCATATGAGTTGGACA-TCGTACTATGCTTTACTGAATCGGTGTTTCCGA-GA 5052
Query 4776 GATGAA-AGAGCATACC-AAAAAGAGAAAAATTCTGCTGCAG-CTTAGT-GGCTTGATTT 4831
|||||| | |||| ||| |||||| ||||||||||||||| | |||| | |||||||||
Sbjct 5053 GATGAACA-AGCACACCAAAAAAG-GAAAAATTCTGCTGC-GACTTA-TCTGCTTGATTT 5108
Query 4832 TAAATAACTTCCATTTCT-TAAAAGATGGTTACACACATGAGGCTGCGGAGATTAGGAGT 4890
| |||| || ||||| | ||||||||| ||| |||||||||||| ||| ||||||| |
Sbjct 5109 TGGATAAATTTCATTT-TGCAAAAGATGGCTACCCACATGAGGCTGAGGAAATTAGGACT 5167
Query 4891 TGCGTTGAGAAAATCCTTTTGCCGAAGATACAG-A--TGCTG-A-T-TGATTCTGACAGT 4944
||| || ||||||| | || |||| ||| ||| | || || | | ||||||||| | |
Sbjct 5168 TGCCTTCAGAAAATTGTGTTCCCGAGGATGCAGAAGCTGATGAATTCTGATTCTGATAAT 5227
Query 4945 GTTAATGTTGACAGCTA-CGTGGCTGCAG-TGAAGGTTCTAAACCTTCTGCCC-AAAGAA 5001
||||||||| |||| || |||||||| | | ||||||||||| || || ||| ||||
Sbjct 5228 GTTAATGTTAACAG-TAGTGTGGCTGC-GCTTAAGGTTCTAAAGCTACT-CCCTGAAGAT 5284
Query 5002 ATAAGGGACCCGCAGCTAGGC-TCTATAGTTC-CTAAAATTTG-CAGTTATTTGAAGGAT 5058
|| |||| | | ||| | |||||||||| | |||| ||| ||||| ||| ||| |
Sbjct 5285 GTATTGGACTCAAACCTA-TCATCTATAGTTCAC-AAAA-TTGCCAGTTTTTTAAAGAAC 5341
Query 5059 GGGTTGGCGAGCACACGTGATGTAGCAAGAAAGGCTCTGGCTGCTTGTGTGGAGGAACTC 5118
|||||| |||||||||||||| ||| ||| |||||||| ||||||| || | |||||
Sbjct 5342 CGGTTGGAGAGCACACGTGATGAAGCCAGATTGGCTCTGGTTGCTTGTTTGAAAGAACTT 5401
Query 5119 GGGCTAGAGTACCTGCAATTTGTTA-TAAAAGA-TTTACGTGCTATATTAAAACGAGGAT 5176
||||| |||||| ||||| ||| || | || | |||||||||||| |||||||||||||
Sbjct 5402 GGGCTGGAGTACTTGCAAGTTG-TAGT-CAACATTTTACGTGCTATCTTAAAACGAGGAT 5459
Query 5177 CTGAGGTGCATGTGCTAGGATACACTGTCAATTTTATCTTATCAAAGTGCTTGTCCAATC 5236
|||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||||
Sbjct 5460 CTGAGGTGCATGTGCTGGGGTACACTCTCAATTCTATCTTATCAAAGTGCTTGTCCAATC 5519
Query 5237 CTAATCCTACGTGTGGGAAGTTGGATCATTGTTTGGGAGATCTCCTTGCAGTGGTGGAAA 5296
||| | | ||||||||||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 5520 CTA--C--A--TGTGGGAAGTTAGATCATTGTTTGGTTGATCTCCTTGCTGTGGTGGAAA 5573
Query 5297 CCGATATCCTTGAAGACGTTTATGAACAGAAAGAGGAGTTAAAAACC-GCGTTCAAGAAG 5355
|||||||||||| ||| ||| |||||||||||||| | ||||| || | ||| ||
Sbjct 5574 CCGATATCCTTGGAGAGGTTGCTGAACAGAAAGAGGTGG-AAAAATTTGCATCCAA-AAT 5631
Query 5356 AAGAAAGAAACA-GTAAAACGCAAGTCACCTGAGACTCTGAAAATGATTGCTGAAAATGT 5414
|||||||||| | |||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 5632 --GAAAGAAACAAG-AAAACGGAAGTCATTTGAGACTCTGAAATTGATTGCTGAAAATGT 5688
Query 5415 AACGTTCAGAAGTAGTCATGTG-TTGAAGTTACTTTCTCCGGTCACAGCTCAGCTGCAGA 5473
|||||||||||| |||| | || |||||||||||||||||||| ||||||||||||
Sbjct 5689 AACGTTCAGAAGC---CATG-GATTAAAGTTACTTTCTCCGGTCACTGCTCAGCTGCAGC 5744
Query 5474 GGCCTTTGACTCCAAAGTT-AATATCAAAACTAAAGGAGATGTTAAAATGTATTGCAGCT 5532
||| | | ||||||||| | || | |||| || || ||||||||||| |||||||||
Sbjct 5745 GGCATCTAACTCCAAAGATCAAAA-CAAATCTGGAGAAGATGTTAAAACAAATTGCAGCT 5803
Query 5533 GGTATTGAAGGCAATCCATCTGTTGATCAAAGAGATCTTTTT-TGTTTTATATATGAACG 5591
||||||||||||||| |||||||||| ||| ||||||||||| | ||||||||||| |
Sbjct 5804 GGTATTGAAGGCAATACATCTGTTGACCAAGGAGATCTTTTTCT-TTTTATATATGGCC- 5861
Query 5592 T-GTTGTTGATGGTATTAACAACAGGAATGGTCTTGGAGATGAAG 5635
| |||| |||||||||||| ||||||| ||||||||||||| |||
Sbjct 5862 TAGTTGATGATGGTATTAATAACAGGAGTGGTCTTGGAGATCAAG 5906
Score = 950 bits (514), Expect = 0.0
Identities = 801/939 (85%), Gaps = 22/939 (2%)
Strand=Plus/Plus
Query 3246 GGCTGGCACTTCTTTAAAGCAGTTTAAAAAGTTGAGATCCTTATGTCTGAAGATTATTGC 3305
|||||||||| |||| |||||||||||| |||||||||||||||||||||| || |||||
Sbjct 3604 GGCTGGCACTGCTTTTAAGCAGTTTAAAGAGTTGAGATCCTTATGTCTGAAAATCATTGC 3663
Query 3306 AT-ATGCTCTTAAGAAGTTCGGGGATTGCAATCTTGGCTCTGAGTTCTGGGACCTCTTCT 3364
| ||| |||| | || | || |||||| |||||||||| |||||||||||||||||||
Sbjct 3664 -TCATGTTCTTGATAAATACGAGGATTGTGATCTTGGCTCCGAGTTCTGGGACCTCTTCT 3722
Query 3365 TTTCAGCAGTGAATCCGTTAATTAAGAGTTTTAAGCAGGAAGGCTCTAGTAGTGAGAGAC 3424
||||||| |||| |||||||||||||||||| |||||||| || ||||||||||||| ||
Sbjct 3723 TTTCAGCTGTGAGTCCGTTAATTAAGAGTTTCAAGCAGGAGGGTTCTAGTAGTGAGAAAC 3782
Query 3425 CAAGCTCATTGTTCAAATGCATCTTTTCAATGAGTAAAAGCTGCAATCTCGTG-ACCTTC 3483
|||| || |||||| |||| |||| ||||||||||||||| | ||||||||| | | ||
Sbjct 3783 CAAGTTCCTTGTTCTCATGCTTCTTGTCAATGAGTAAAAGCCGTAATCTCGTGAATC-TC 3841
Query 3484 TTATGTCGGGAGGAGTTTCTTATTTCAGACATTTTTTCAATCCTAACAGTCACTACAGCT 3543
||||||||||| |||| ||| || |||||||||||||||| ||||| ||||| || |||
Sbjct 3842 TTATGTCGGGAAGAGTCCCTTGTTCCAGACATTTTTTCAATTCTAACTGTCACCACGGCT 3901
Query 3544 TCAAAAGATATAAAGTCTTATGCCTTGAAGTTCATCGAGAATCTGCTCAGGCTTGACAAT 3603
||| ||| ||||||||||| ||||||||||||||| ||||||||||| | |||||||||
Sbjct 3902 TCAGAAGCTATAAAGTCTTCTGCCTTGAAGTTCATTGAGAATCTGCTTTGTCTTGACAAT 3961
Query 3604 GAGTTGGATGAGGATGAGCATATGATCAAAGGGTTCTTAGATCCATATATAGAGGCACTG 3663
| ||||| ||||||||| |||||||| || ||| ||||||| |||||||| ||||||
Sbjct 3962 GTGTTGGGTGAGGATGAAAATATGATCCGTGGATTCGTAGATCCGTATATAGAAGCACTG 4021
Query 3664 ATTAGCAGCTTGCACTCCCTCTTTT--TTGGGGATATTTTGAAAAGGAAATCAGTCAAGT 3721
|||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 4022 ATTAACAGCTTGCA-T-TCTCTTTTCATTGGGGATATTTTGAAAAGGAAATCAGTCAAGT 4079
Query 3722 ATCAT-GGAAATAGAGAGATTATGATTCTCAAACTATTGTCGAAGCACATACGAGATGGG 3780
||||| || || |||||||||| ||||| ||| ||||||| |||| || | |||| |
Sbjct 4080 ATCATGGGGAA-AGAGAGATTAAAATTCTTAAATTATTGTCAAAGCGTATGCAAGATCGC 4138
Query 3781 TCTCATGTTACGAAGTATTTGGATGTCTTGCTGTCTTTCTTGGATAAAAGTGTGAAAGAT 3840
|| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 4139 TCCCATGTTATGAAGTATTTGGATGTCTTGCTGTCTTTCTTGAATAAAAGTGTTAAAGAT 4198
Query 3841 TCTGATATTCATCGTGAGGCTTTGCTAGCTATTCAGGACATC-TCATTGAACCTTGGGAC 3899
||||||| | |||||| ||||||||||| |||||||||||| | | | | |||||||
Sbjct 4199 CCTGATATCCGTCGTGAAGCTTTGCTAGCCATTCAGGACATCAT-AGCGTATCTTGGGA- 4256
Query 3900 TG-AGAGTACCAGCA-GAATTGTTAAGATACTGTCTC-C-TCTGCTTATTGATGCTGAAA 3955
|| |||||||||||| || || | || |||| ||||| | ||| ||| |||||||||||
Sbjct 4257 TGGAGAGTACCAGCAAGA-TTAT-AA-ATACAGTCTCTCCTCTACTTGTTGATGCTGAAC 4313
Query 3956 ATGAAGTTAGATTATGCATTTGTAATCTTCTTGAATCTCTTGCAAAAGTTGACCCGTCTC 4015
||| |||||||||||||||||| |||||||||| |||||||||||| | ||| || |
Sbjct 4314 TTGATGTTAGATTATGCATTTGTGATCTTCTTGAGTCTCTTGCAAAAATCGACTTTTCAC 4373
Query 4016 TGGTTCATGTGGCAAAATGTGTCCGCGATATGAATGCCAACTCACCCATGGAAGTTGATG 4075
||| | |||||||||| ||||||||||||||||||||| |||| | |||||||||||||
Sbjct 4374 TGGATGATGTGGCAAAGCGTGTCCGCGATATGAATGCCATCTCAGCTATGGAAGTTGATG 4433
Query 4076 GCCTTGACTATGAAAAGATAATTGATGCTTATG-GGAAGATTGATGCAGATTTCTTTAAT 4134
||||||||||||||||||| || |||| |||| ||| |||| ||||||||||||||| |
Sbjct 4434 ACCTTGACTATGAAAAGATAGTTAATGCCTATGTGGA-GATTAATGCAGATTTCTTTATT 4492
Query 4135 AAATCCTCGGAGCAGCACGTGATGATCATACTCTCACAG 4173
|||||||| |||||||| |||||| ||||||||||||
Sbjct 4493 AAATCCTCAGAGCAGCATACGATGATTATACTCTCACAG 4531
Score = 527 bits (285), Expect = 6e-148
Identities = 602/745 (81%), Gaps = 61/745 (8%)
Strand=Plus/Plus
Query 1252 ATGATTTTGGG-GTCTTCGGAGGACGTTCTTCCTCTGTTAATATCATTGTGT---GAG-- 1305
|||| |||||| |||||| ||||| ||| ||||||||||| || |||||||| |||
Sbjct 1502 ATGA-TTTGGGAGTCTTCTGAGGAAGTTATTCCTCTGTTACTAACATTGTGTGAAGAGCA 1560
Query 1306 -AAG---CAGCAAGCAAGTCCCGACAG-GGTGACCATCATAGGGGAATCATTTGAGAGCA 1360
||| || ||| |||||| |||| | |||| || |||| | || |||||||||| |
Sbjct 1561 TAAGACACAACAAACAAGTCACGAC-GTCGTGAACAGCATAAGTCAAACATTTGAGAGTA 1619
Query 1361 AATTTGAGAGAATTCATGAGTAT-TTGGAAG-AGAATATTAAGAAA-ATTCAAAC-GAAG 1416
|| |||||||||||||||| | ||||||| | || ||||| ||| ||| ||| |||
Sbjct 1620 GATACGAGAGAATTCATGAGT-TCTTGGAAGCA-AAGATTAA-AAAGGTTC-AACAGAAT 1675
Query 1417 ATAGAGAATACAGGATTAGCTCAAATTGATGAGGCTGAGTTGGCTGCTGTTTGGGGAGCT 1476
|| |||||| | ||||||||||||||| ||||||| ||||||||||| ||||||||| |
Sbjct 1676 ATTGAGAATGCTGGATTAGCTCAAATTAATGAGGCCGAGTTGGCTGCAATTTGGGGAGTT 1735
Query 1477 GTCAATTGTTTTCCCTATTTTAAAGTGGATTCATCATTACTGATTTGCTTTAAGAATACT 1536
||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1736 GTCAAGTGTTATCCTTATTTTAAAGTGGATTCATCATTATTGATTTGCTTTAAGAAAACT 1795
Query 1537 CTCAGACAGCATTTGGCAGCCTCAGATGTAAACACTT-CTAGT-GCTCCAGTATTGATGT 1594
||||||||||||||||||| ||||||||| |||||| | ||| || |||| ||||||||
Sbjct 1796 CTCAGACAGCATTTGGCAGTGTCAGATGTAGACACTTGC-AGTGGC-CCAGAATTGATGT 1853
Query 1595 GGCAGAGCTTACTTGGTGCTGCTTTGGGGTCATGTCT-CAAATTCTGTCATAATGGAAGA 1653
||||||||||||||||| || ||||| |||||||| | |||| || | || ||
Sbjct 1854 GGCAGAGCTTACTTGGTACTACTTTGAGGTCATGT-TACAAA-------ATGACGG--GA 1903
Query 1654 CTCATCCACAGTGATTTAGAGGAAGCTTTGTCACTTGCAAAATG-TTACAAGTCATGTGC 1712
||| |||||||||| |||||||||||||||| |||| ||| | ||||||||||||||
Sbjct 1904 ATCAACCACAGTGATCTAGAGGAAGCTTTGTCTTTTGCTAAA-GATTACAAGTCATGTG- 1961
Query 1713 A-CAAGTGCTGTCTCCTGTGGCCGACT-ATTTGGATTTTGTGTACAGGCCT-CTAATAGC 1769
| |||||| |||| || |||||||| | |||||| ||| || |||||||| | | ||||
Sbjct 1962 AGCAAGTGTTGTCCCCGGTGGCCGA-TGTTTTGGAATTTATGCACAGGCCTGC-ATTAGC 2019
Query 1770 TAACGATGATAGCTGTAAAG-CATGTCCAGATCTCCAAGCAAATAAAGCTCAAGA-GACG 1827
| | ||| ||| | | ||| | | |||||| || ||||||||||| ||| ||| | |
Sbjct 2020 T--C-ATGGTAGGTCT-AAGCCTTATCCAGAACTTCAAGCAAATAAGGCTGGAGATG-CT 2074
Query 1828 TTTGACGTATTTTCTGAAAATTTACGTCACT-CAAACAAAGATGTCCGTCTTCA-GACTA 1885
||||| |||||||||||||||| ||||| | | |||||| || |||||||| | ||||
Sbjct 2075 TTTGAAATATTTTCTGAAAATTTGCGTCA-TCCGAACAAAAATATCCGTCTT-ATGACTC 2132
Query 1886 T-ACGGATTTTGTGCCATTTTGAAACTTTGTC-TCCTAATCCATCTTTGGAAGAGAATCC 1943
| | |||||||||||||||||||||||||||| || | | || ||||| |||||| ||||
Sbjct 2133 TGA-GGATTTTGTGCCATTTTGAAACTTTGTCGTC-TGACCCTTCTTTTGAAGAGCATCC 2190
Query 1944 TCCAAAGAAGAAACA-GAAAACTGA 1967
||| ||||||||| | |||||||||
Sbjct 2191 TCCTAAGAAGAAA-ATGAAAACTGA 2214
Score = 87.9 bits (47), Expect = 1e-15
Identities = 64/72 (89%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 5673 TGGTGCTAAGTCATGTCCACATCTTATAACCGTGTTTGCTCTGGACTTATTGCACAACAG 5732
|||| | |||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 5974 TGGTCCGAAGTCATGTCCACATCTTATAACCGTGTTTGCTCTGGACTTATTTTATAACCG 6033
Query 5733 ACTGAAACAAAT 5744
| ||||| ||||
Sbjct 6034 AATGAAA-AAAT 6044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 380461924849
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5