BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912452
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25550.1 | Symbols: | myb-like transcription factor family ... 1107 0.0
AT1G68670.1 | Symbols: | myb-like transcription factor family ... 193 4e-48
AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor fam... 139 5e-32
> AT1G25550.1 | Symbols: | myb-like transcription factor family
protein | chr1:8976434-8978093 FORWARD LENGTH=1396
Length=1396
Score = 1107 bits (599), Expect = 0.0
Identities = 921/1064 (87%), Gaps = 72/1064 (7%)
Strand=Plus/Plus
Query 1 ATGATGATGTTCAAGAGCGGTGACATGGAGGATCACACCCAGAAAATGAAGAGATGTCAC 60
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 211 ATGATGATGTTCAAGAGCGGTGACAT---GGATTACACCCAGAAAATGAAGAGATGTCAC 267
Query 61 GAATACGTAGAAGCTCTCGAAGAAGAACaaaaaaaGATTCAAGTCTTCCAACGTGAGCTC 120
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 268 GAATATGTAGAAGCTCTAGAAGAAGAACAAAAAAAGATTCAAGTCTTTCAACGTGAGCTC 327
Query 121 CCTTTATGTTTAGAACTTGTAACCCAAGCTATTGAGTCATGTCGGAAGGAGCTATCGGGA 180
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct 328 CCTTTATGTTTAGAACTTGTAACCCAAGCTATCGAGTCATGTCGGAAGGAGTTATCGGAA 387
Query 181 TCGTCGGAACATGTTGGCGGCCAATCAGAGTGTTCTGAGAGGACGACTAGTGAGTGCGGC 240
|| || ||||||||||||||||| ||||| ||||||||| |||| |||||||| | ||
Sbjct 388 TCTTCAGAACATGTTGGCGGCCAGTCAGAATGTTCTGAGCGGACAACTAGTGAAT---GC 444
Query 241 GGCGGTGGCGGTGTCGTGTTTGAAGAGTTTATCCCGATTAAGTGGAGTTCTTCTTCATCC 300
|||||| || |||||||||||||||||| || || |||||||||||| |||||||
Sbjct 445 GGCGGT-GC-----CGTGTTTGAAGAGTTTATGCCAATCAAGTGGAGTTCTGCTTCATCT 498
Query 301 GATGAAACCGATAAAGATGAAG-A----AG----C--------TG----A-G--AATAAC 336
|||||||||||||||||||||| | || | || | | ||||||
Sbjct 499 GATGAAACCGATAAAGATGAAGAAGCTGAGAAAACTGAGATGATGACCAATGAAAATAAC 558
Query 337 GGTGGTGATAAGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTATGGAACCAATCGCCA 396
| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 559 GATGGTGATAAGAAGAAATCGGATTGGCTTAGATCTGTTCAATTGTGGAACCAATCACCA 618
Query 397 GATCCAAAACCTAAAGAGGATCATGTGACTAATAAAAAGACGAACGTAATCGAGGTCAAA 456
|||||| ||||| | || | | | | | ||| ||| ||||| || ||||||
Sbjct 619 GATCCACAACCT----A--AT-A----A-T-A-AGAAA-CCGATGGTAATTGAAGTCAAA 663
Query 457 CGCAACGCTGGTGCGTTTCAACCGTTTCAAAAGGAGAAACCTAAAGCTGCAGATTCTCAA 516
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 664 CGCAGCGCTGGTGCGTTTCAACCGTTTCAAAAGGAGAAACCTAAGGCTGCAGATTCTCAA 723
Query 517 CCGCTTA--AAA-CAATCACTCCGACGTCGACGACGACATCTAGTTCCACGGCGGAAACA 573
|| |||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 724 CCACTTATTAAAGCAATTACTCCGACGTCGACGACGACAACTAGTTCCACGGCGGAAACC 783
Query 574 GTCGGAGGT--AAAAGTGAGTTTGAGGATCAGAAACAATATCATTCGAATAGGAAGCAAA 631
||||| ||| |||| ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 784 GTCGGGGGTGGAAAA--GAGTTTGAGGAGCAGAAACAATCTCATTCGAATAGGAAGCAAA 841
Query 632 GACGTTGCTGGTCGGCGGAGTTACACCGGAGATTCTTGCACGCGCTTCAACAACTTGGTG 691
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 842 GACGTTGCTGGTCACCGGAGTTACACCGCAGATTCTTGCACGCGCTTCAACAACTTGGTG 901
Query 692 GATCACATGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTCGATGGTTTAACTA 751
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 902 GATCACATGTTGCTACGCCTAAGCAGATTAGAGATCTTATGAAGGTCGATGGTTTAACTA 961
Query 752 ATGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAGACCAGCTACTC 811
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 962 ATGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTC 1021
Query 812 CGGTAATAACAAACGCTGGTGAAAATACACAACAACGGCAATTCATGGTGGTCGAAGGAA 871
||||| ||| | || |||||||||| ||||||||||||| || |||||| | ||||| |
Sbjct 1022 CGGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCA 1081
Query 872 TTTGGGTGCCGTCGCACGATACAACGAATAATAGAGTTTACGCTCCTGTGGCG------- 924
||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1082 TTTGGGTACCTTCACACGATACAACTAATAATAGAGTTTACGCTCCTGTGGCGACACAAC 1141
Query 925 -GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGCCGGCGTTGCAAATCGCC-GACAACA 981
| ||||||||| |||||||||||||||| | ||| |||||||||| || | |||||
Sbjct 1142 CGCCGCAATCTTCAACGTCGGGAGAGAGAAGCAATCGGGGTTGCAAATCTCCCG-CAACA 1200
Query 982 TCTTCT--T-CTacacacacaccacacCGTCTTCCTCTTTCATA 1022
|||||| | |||||||||||||||||| |||||||||||||||
Sbjct 1201 TCTTCTACTACTACACACACACCACACCTTCTTCCTCTTTCATA 1244
> AT1G68670.1 | Symbols: | myb-like transcription factor family
protein | chr1:25782029-25784076 FORWARD LENGTH=1583
Length=1583
Score = 193 bits (104), Expect = 4e-48
Identities = 166/196 (85%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 613 CATTCGAATAGGAAGCAAAGACGTTGCTGGTCGGCGGAGTTACACCGGAGATTCTTGCAC 672
||| || |||| || ||||| || ||||||||| |||| |||||||| ||||| | ||
Sbjct 946 CATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAAC 1005
Query 673 GCGCTTCAACAACTTGGTGGATCACATGTTGCTACACCTAAA-CAGATTAGAGATCTCAT 731
|||||||| || ||||| ||||| |||||||||||||| ||| || || || |||| |||
Sbjct 1006 GCGCTTCAGCAGCTTGGAGGATCTCATGTTGCTACACC-AAAGCAAATCAGGGATCACAT 1064
Query 732 GAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGCCATTTACAGAAATATAGA-TTGC 790
|||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| || |
Sbjct 1065 GAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTT-C 1123
Query 791 ACACAAGAAGACCAGC 806
|||||||||| |||||
Sbjct 1124 ACACAAGAAGGCCAGC 1139
> AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor family
protein | chr1:4556892-4558708 FORWARD LENGTH=1237
Length=1237
Score = 139 bits (75), Expect = 5e-32
Identities = 149/184 (81%), Gaps = 8/184 (4%)
Strand=Plus/Plus
Query 625 AAGCAAAGACGTTGCTGGTCGGCGGAGTTACACCGGA-GATTCTTGCACGCGCTTCAACA 683
||||||||| | || |||||| || | || || || | |||||| |||| |||||||
Sbjct 626 AAGCAAAGAAGGTGTTGGTCGTCGCAATTGCA-TAGACGCTTCTTGAACGCTCTTCAAC- 683
Query 684 ACTT-GGTGGATCACATGTTGCTACACCTAAA-CAGATTAGAGA-TCTCATGAAGGTCGA 740
|||| |||||| | ||||| ||||| || ||| || || || || | | |||||||| ||
Sbjct 684 ACTTAGGTGGACCTCATGTAGCTACGCC-AAAGCAAATCAGGGAGT-TTATGAAGGTTGA 741
Query 741 TGGTTTAACTAATGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAG 800
||| ||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 742 TGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGAAG 801
Query 801 ACCA 804
|||
Sbjct 802 GCCA 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5