BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912469
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:71053... 1088 0.0
AT3G20360.1 | Symbols: | TRAF-like family protein | chr3:70997... 350 2e-95
> AT3G20370.1 | Symbols: | TRAF-like family protein | chr3:7105371-7107225
FORWARD LENGTH=1396
Length=1396
Score = 1088 bits (589), Expect = 0.0
Identities = 969/1149 (84%), Gaps = 39/1149 (3%)
Strand=Plus/Plus
Query 22 AGAAACACCAGCCCTGTTGTTTATCTCTTGTTTTGTCTCATT-GTCGCATCTGCGTCTGC 80
|||||||| ||| || ||| |||||| ||| |||||||| || | ||||||| ||||
Sbjct 126 AGAAACACAAGCGCTATTGCTTATCTATTGCTTTGTCTC-TTCATTACATCTGCCACTGC 184
Query 81 A-AGCTCCTTCATAAGACAATTCACTGATGGCTTCAATACAAATCTGCAGCAAGAAAAT- 138
| | ||||||||| ||||| ||||||||| | |||| ||||||||||||| || | |
Sbjct 185 ACA-TTCCTTCATACGACAAATCACTGATGACCTCAAAACAAATCTGCAGC-AGGAGGTA 242
Query 139 GGAGTAGGACCAATGCC-AAACCAGGACAAAGGGA-ACTATTTAC-ATAACAATGAA-GA 194
|||| || |||||| || ||||| |||| | ||| | || |||| | || ||| || ||
Sbjct 243 GGAGCAGAACCAAT-CCAAAACCTGGACGTA-GGACATTACTTACAAGAA-AAT-AAGGA 298
Query 195 GATCTCATCACGTGATTATAAAGTCTCAGCTTCAAATGTAGTGAAAGGTCTGAGAGATCA 254
|||||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||
Sbjct 299 GATCTCATCACGTGATTATAAAGTATCAGCTTCAAACGCAGTGAAAGGTTTGAGAGATCG 358
Query 255 TCCTCCATCCTCTTACTCTCTCAAGATGGAGTCTTTCAACACGCTCCTTAAGTCAACCTT 314
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 TCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAACACGCTCCTTAAGTCAAC-TT 417
Query 315 -CACAGAGAAATACGAATCTCGTCC-TTTCTCAGTTGGTGGATACAACTGGACACTTGTT 372
||| |||||||| | ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 418 ACACGGAGAAATATGTATCTCGTCCCTTT-TCAGTTGGTGGATACAACTGGACACTTGTT 476
Query 373 GTGTACCCCAACGGGAACAAGAAAGACAGTGGCTCAGGGTACCTTTCGCTATACGTAGCC 432
|||| ||| || || |||||||| || ||||| |||||||||||||| || |||||||||
Sbjct 477 GTGTTCCCAAATGGTAACAAGAAGGATAGTGGTTCAGGGTACCTTTCTCTTTACGTAGCC 536
Query 433 ATAGACAACTCGACCCTCGTCGCTGCACATCAAGAGGTTTATGCGGATCTAAGGTTTTAC 492
||||||||||| || || ||| | ||| |||||| |||| || |||||||||||||||
Sbjct 537 ATAGACAACTCAAC--TC-TCG--G-ACAGCAAGAGATTTACGCAGATCTAAGGTTTTAC 590
Query 493 ATCTTCAACAAGAACGAGAGGAAGTACTTCACCATCCAAGATACCGATGTATGGAAATTT 552
||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 591 ATCTTTAACAAGAATGAGAGGAAGTACTTCACTATCCAAGATACCGATGTGTGGAAGTTT 650
Query 553 AATGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCTCTATTGATACATTCAAAGAC 612
| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 651 AGTGTCTTCAAAACGATGTGGGGATTCTCTCAGGTCCTCCCCATTGATACATTCAAAGAT 710
Query 613 CCGA-AAAACGGATACCTTTACGATGGAGATCATTGCGAGTTTGGTGTTGACGTGACCAT 671
|||| |||| ||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct 711 CCGACAAAA-GGATATCTCTACGATGGAGATCACTGCGAGTTTGGTGTTGATGTAACCAT 769
Query 672 TCCTTCTCTCTAT-AAAATATCTGAACTTTTCACTGTCACTGAGAATTTCCATAAC-CCG 729
||||||||||| |||| ||| ||||||||| ||||||| |||||||| | ||| |||
Sbjct 770 GCCTTCTCTCTACGAAAA-ATCGGAACTTTTCTCTGTCACAGAGAATTTTC-TAAATCCG 827
Query 730 AGATTCACCTGGAGCATTCGGGGATTCTCTATGCTTCTCAAAGATTCTTACCTATCAGAT 789
||||||||||||| ||||||||||||||||| ||| || ||| | ||||||||||||
Sbjct 828 AGATTCACCTGGACCATTCGGGGATTCTCTACGCTGCTAAAAAACAGTTACCTATCAGAA 887
Query 790 GTATTTTCAATCGGCGGAAGAAATTGGAATATACAAGTGTATCCAAATGGTGATGCCGCA 849
|| || || ||||| ||||||| ||||||||||||| | |||||| |||| || |
Sbjct 888 GTGTTCTCCATCGGAGGAAGAAGTTGGAATATACAAATCAATCCAAGTGGTCTTGGTACG 947
Query 850 GTAGAGGGAAAAGCCTTGTCGATGTTTCTTAACCTTGATGCAAACGAGAAATTCAGTCCC 909
| |||||||||||| |||||||||| |||| |||| ||| || |||| |||||| ||
Sbjct 948 GGAGAGGGAAAAGCTTTGTCGATGTATCTTGGCCTTAATGTGAATGAGATATTCAGACCA 1007
Query 910 TATGAGAAGATTTATGTTCGAGCCAAGCTTCGAATTCTCAACCAACGCCAAT-TCAATAA 968
||||||||||||||||||||||||||||||||| ||| ||||||| | ||| ||| |||
Sbjct 1008 TATGAGAAGATTTATGTTCGAGCCAAGCTTCGAGCTCTTAACCAACTC-AATCTCAGTAA 1066
Query 969 CGTCGAAAAGCAACTTGATGTTTGGTATAATGGTCCGGGATATTCAGGATTTTCTGGTTG 1028
| |||||| | |||| ||| ||||||| ||||||||||||||| || || | | | |
Sbjct 1067 CATCGAAAGGGAACTCGATATTTGGTACAATGGTCCGGGATATGGAGAATATA--GCT-G 1123
Query 1029 GGGTTATAA-TGACTTTATCTCACT-CTCAGATCTCAAAGATTCATCAAAGGGTTTCGTT 1086
||||| | ||| ||||||| | | | | |||||| ||||||||||||||||||||||
Sbjct 1124 GGGTT-TCCCTGAGTTTATCT-ATTTCCCTTATCTCACAGATTCATCAAAGGGTTTCGTT 1181
Query 1087 GTGAATGATGTGTTGATGGCTCAAGTCGAAATGGAAGCCATTTCTTCAACCAAGTACTTC 1146
||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1182 AAGAACGATGTGTTGATGGTTCAAGTTGAAATGGAGGCCATTTCTTCAACCAAGTACTTC 1241
Query 1147 CCTAATTAG 1155
|| | ||||
Sbjct 1242 CCGAGTTAG 1250
> AT3G20360.1 | Symbols: | TRAF-like family protein | chr3:7099771-7101636
REVERSE LENGTH=1320
Length=1320
Score = 350 bits (189), Expect = 2e-95
Identities = 719/962 (75%), Gaps = 87/962 (9%)
Strand=Plus/Plus
Query 235 GTGAAAGGTCTGAGAGATCATCCTCCATCCTCTTACTCTCTCAAGATGGAGTCTTTCAAC 294
||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 219 GTGAAGGGTCTGAGAGAACGTCCTCCATCGTCTTACTCTCTCAAGATGGAGTCTTTCAAC 278
Query 295 ACGCTCCTTAAGTCAACCTT-CACAGAGAAATACGAATCTCGTCCTTTCTCAGT-T-GGT 351
|| ||| | ||||| || ||| |||| |||||||||||||||||| | || | |||
Sbjct 279 ACACTCATGAAGTCTGT-TTACACTGAGAGATACGAATCTCGTCCTTT-T-AGGGTCGGT 335
Query 352 GGATACAACTGGACACTTGTTGTGTACCCCAACGGGAA-CAAGAAAGACAGTGGCT-CAG 409
||||||||||||| ||||||||||| || || ||||| |||||| || | || | |||
Sbjct 336 AGATACAACTGGACGCTTGTTGTGTATCCGAA-GGGAAACAAGAACGATAACGG-TACAG 393
Query 410 GGTACCTTTCGCTATACGTAGCCATAGACAACTCGACCCTCGTCGCTGCACA-TCAAGAG 468
|| || ||||||||||||| | | |||||||||| || ||| | || || | | |||||
Sbjct 394 GGCACATTTCGCTATACGTCGTCTTAGACAACTCAACTCTCACCTCT-CAAAGTGAAGAG 452
Query 469 GTTTATGCGGATCTAAGGTTTTACATCTTCAACAAGAACGAGAGGAAGTACTTCACCATC 528
||| ||| ||||| || |||||| | ||||||||||| |||| ||||||||| || |||
Sbjct 453 GTTCATGTAGATCTCAGATTTTACGTATTCAACAAGAAAGAGACGAAGTACTTTACGATC 512
Query 529 CAAGATACCGATGTATGGAAATTTAATGTCT-TCAAAACGA-TGTGGGGATTCTCTCAGG 586
|||||||| ||||||||| ||| | || | |||||| || |||||||||| ||| |||
Sbjct 513 CAAGATACTGATGTATGGCGATTCAGTG-CAATCAAAA-GAATGTGGGGATTTTCTAAGG 570
Query 587 TCCTCTC-TATTGAT-ACATTCAA-AGACCCGAAAAACGGATACCTTTACGATGGAGATC 643
| || || | | ||| || || || | ||| ||||| ||||||||||| || | || |
Sbjct 571 TTCT-TCCTCT-GATTACGTTTAACA-ACCTAAAAAATGGATACCTTTATGACGTTGACC 627
Query 644 ATTGCGAGTTTGGTGTTGACGTGACCATTCCTTC-TCTCTAT-AAAATATCTGAACTTTT 701
|||| |||||||| |||||||| | |||||| | | |||| |||| ||| ||| ||||
Sbjct 628 ATTGTGAGTTTGGCGTTGACGTTATCATTCCACCAT-TCTACGAAAA-ATCGGAAGTTTT 685
Query 702 CACTGTCACTGAGAATTT-CCATAACCCGAGATTCACCTGG-AGCATTCGGGGATTCTCT 759
| ||||||| ||| ||| || | |||||||||||||||| | |||| |||| |||
Sbjct 686 CTCTGTCACCAAGAGTTTTCCG-AGCCCGAGATTCACCTGGTAT-ATTCAAGGATACTCG 743
Query 760 ATGCTTCTCAAA-GATTCTTACCTATCAGATGTATTT--TCAATCGGCGGAAGAAAT-TG 815
| || | | | |||| |||||||||| | | || ||| |||| |||| ||| ||
Sbjct 744 ACACTGC-CTACTGATT---ACCTATCAGAGG-AGTTCATCA-TCGGAGGAA-AAAGCTG 796
Query 816 GAATATAC-AAGTGTATCCAAATGGTGATGCCGCAGTAGAGGG-AAAAGCCTTGTCGATG 873
|||| ||| || | | | ||||||| || ||| | || || |||| |||||| |
Sbjct 797 GAATTTACGAA-TCTTTAAAAATGGTTTTGGCGCTTTTGAAGGCAAAAAT-TTGTCGCT- 853
Query 874 TT-TCTTAACCTTGATGC-A-AACGAG--A--AATT-CAGTCCCT-ATGAGAAGATTTAT 924
|| ||||||||||| || | || ||| | || || ||| |||| ||| ||||
Sbjct 854 TTATCTTAACCTTGG-GCCACAA-GAGCTACTAAAAGCAAAACCTTATGACAAGGTTTAC 911
Query 925 GTTCGAGCCAAGCTTCGAATTC-TCAACCAA--CG---CC-AATTCAATAACGTC--GAA 975
|| |||||||||||||| ||| | |||||| || || ||| |||| ||| | |
Sbjct 912 GTACGAGCCAAGCTTCGTGTTCCT-AACCAATTCGGATCCCAATCCAATCTCGTTTTGGA 970
Query 976 AAG-CAACTTGATGTTTGGTATAATGGTCCGGGATATTCAGGATTTTCTGGTTGGGGTTA 1034
||| | ||||||| |||| | | | ||| | | || || | ||| |||| ||
Sbjct 971 AAGGCCACTTGATAACTGGT-TCA-G-TCCCCAA-A--CA--AT---CGGGT-GGGGATA 1018
Query 1035 TAATGACTTTAT-CTCACTCTCAGATCTCA-AAGATTCATCAAAGGGTTT-CGTTGTGAA 1091
|||||| || | | || || ||||| | || |||||||||||||||| | |||||||
Sbjct 1019 CGCTGACTTCATGC-CTCTTTCTGATCTGAGAA-ATTCATCAAAGGGTTTTC-TTGTGAA 1075
Query 1092 TGATGTGTTGATGGCTCAAGTCGAAATGGAAGCCATTTCTTCAACCAAGTAC-TTCCCTA 1150
|||| ||||| | | |||||||| ||||| | |||||||| || || ||| ||||| |
Sbjct 1076 TGATATGTTGGTTGTTCAAGTCGCTATGGAGGAAATTTCTTCTACAAATTACCTTCCCAA 1135
Query 1151 AT 1152
||
Sbjct 1136 AT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5