BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912489
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25250.1 | Symbols: AtIDD16, IDD16 | indeterminate(ID)-domai... 1622 0.0
> AT1G25250.1 | Symbols: AtIDD16, IDD16 | indeterminate(ID)-domain
16 | chr1:8849549-8851612 FORWARD LENGTH=1181
Length=1181
Score = 1622 bits (878), Expect = 0.0
Identities = 1022/1091 (94%), Gaps = 11/1091 (1%)
Strand=Plus/Plus
Query 77 ATGGAGTC-GACGCGACCCAAAAGAGAAAACGAAGACCCGCAGGG-----AG--ACCAGA 128
|||||| | ||||| ||||| ||||||||||| |||||||||||| || | ||||
Sbjct 1 ATGGAG-CTGACGCAACCCATAAGAGAAAACGGAGACCCGCAGGGACACCAGCTAACAGA 59
Query 129 TCCAGATGCAGAGGTGGTATCTTTATCACCAAGGACGTTGCTAGAGTCAGATCGGTACGT 188
|||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 60 TCCAGATGCAGAGGTGGTATCTTTGTCACCAAGAACGTTACTAGAATCAGATCGGTACGT 119
Query 189 GTGTGAGATCTGCAACCAAGGGTTTCAAAGGGATCAGAATTTACAGATGCATAGAAGAAG 248
||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| |
Sbjct 120 GTGTGAGATCTGCAACCAAGGGTTTCAGAGAGATCAGAATCTACAGATGCATAGAAGACG 179
Query 249 GCATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAG 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAG 239
Query 309 AGTCTACGTGTGTCCTGAGCCAACATGTCTTCACCACGATCCGTGTCACGCCCTTGGAGA 368
|||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||
Sbjct 240 AGTCTACGTGTGTCCTGAGCCAACATGTCTCCACCATGACCCGTGCCACGCTCTTGGAGA 299
Query 369 TCTGGTCGGAATCAAAAAGCACTTCCGCCGGAAACATAGTGTTCACAAGCAATGGGTTTG 428
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 300 TCTGGTCGGAATCAAAAAGCACTTCCGCCGTAAACACAGTGTCCACAAGCAATGGGTTTG 359
Query 429 CGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACTTG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 CGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACCTG 419
Query 489 TGGCTCACGCGGTCACTCCTGTGACTGTGGCCGCGTTTTCTCCAGGGTTGAGTGTTTCAT 548
|| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 420 CGGTTCACGCGGTCACTCCTGCGACTGTGGCCGCGTTTTCTCCAGGGTTGAGAGTTTCAT 479
Query 549 AGAGCATCAAGATACTTGCAACATCCGGGAACCTCCACCCACCAATCACCGTCCTCTACA 608
|||||||||||||||||||| ||||||| |||||| ||||||||| ||||||| ||||||
Sbjct 480 AGAGCATCAAGATACTTGCACCATCCGGCAACCTCAACCCACCAACCACCGTCATCTACA 539
Query 609 GCAGCACACGACGGGCCTTGCCGCTCCATCAAGAACCACTTCGACCA-CAAGCTTTGGCC 667
||||||||||| |||||||| |||||||||||||||||||||||| | ||||||| ||||
Sbjct 540 GCAGCACACGATGGGCCTTGACGCTCCATCAAGAACCACTTCGAC-AGCAAGCTTCGGCC 598
Query 668 CTTTATTGCATGGACTTCCTTTGTTACGTCCACCACGACCGTCCAATCAACATTCACCAG 727
|||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 599 CTTTATTGCATGGACTTCCTTTGTTAAGACCTCCACGACCGTCCAATCAACATTCACCAG 658
Query 728 CTTTTGCTTACCCTTTCAATGCTTCATCAACTCCTTTCGAAAGCCTCGAACTTCAACTAT 787
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 CTTTTGCTTACCCTTTCAATGCTTCATCAGCTCCTTTCGAAAGCCTCGAACTTCAACTAT 718
Query 788 CCATAGGAATGGCGAGAACATCAGCACAAGCAAAGCGCAACGAAAAGGGAGAGACGAGTT 847
||||||||||||| ||||||||||||||||| | || |||||||||| ||||||||||||
Sbjct 719 CCATAGGAATGGCAAGAACATCAGCACAAGCGAGGCACAACGAAAAGAGAGAGACGAGTT 778
Query 848 TCACCAAGGAGAGAGTGAACGAGGAGGCAAGGAAGGCAGAGGAAACGAGACAAGAAGTTA 907
| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 TAACAAAGGAGAGAGCGAACGAGGAGGCAAGGAAGGCAGAGGAAACGAGACAAGAAGCGA 838
Query 908 AAAGGCAGATAGAGATGGCGGAGAGGGATTTTGAGAAAGCTAAGAGAATAAGGGAAGAGG 967
||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |
Sbjct 839 AAAGGCAGATAGAGATGGCAGAAAAGGATTTTGAGAAAGCTAAGAGAATAAGGGAAGAAG 898
Query 968 CGAAAACCGAGCTGGAGAAGGCTCAGGTTGTTAGAGAAGAAGCAATCAAGAGGATTAATG 1027
| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 899 CAAAAACCGAGTTGGAGAAGGCTCACGTTGTTAGAGAAGAAGCAATCAAGAGGATTAATG 958
Query 1028 CAACAATGATGGAGATCACTTGCCACTCTTGCAAGCAACTGTTTCAGCTGCCTGTTATGG 1087
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 959 CAACAATGATGGAGATCACTTGCCACTCTTGCAAGCAACTATTTCAGCTGCCTGTTACGG 1018
Query 1088 CTGATGAGAGTACGTCGTCTCTTGTTATGAGTTACGTTTCCTCGGCGACAACTGAAGGAG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGATGAGAGTACGTCGTCTCTTGTTATGAGTTACGTTTCCTCGGCGACAACTGAAGGAG 1078
Query 1148 AATGTGAGTGA 1158
|||| ||||||
Sbjct 1079 AATGCGAGTGA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5