BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912506
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57070.1 | Symbols: | Glutaredoxin family protein | chr3:21... 359 7e-99
> AT3G57070.1 | Symbols: | Glutaredoxin family protein | chr3:21123924-21125647
FORWARD LENGTH=1724
Length=1724
Score = 359 bits (194), Expect = 7e-99
Identities = 219/231 (95%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 1 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 GGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACATGC 1360
Query 61 CGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAGTG 120
|| |||||||| ||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1361 CGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAGTG 1420
Query 121 TTTGAAGAACAAGACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGGTG 180
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1421 TTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGGTG 1480
Query 181 CGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTG 229
||||||||||||| | |||||||||||||| ||||||||||||| ||||||
Sbjct 1481 CGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTG 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5