BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912544
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24265.3 | Symbols: | Protein of unknown function (DUF1664)... 1424 0.0
AT1G24267.2 | Symbols: | Protein of unknown function (DUF1664)... 1051 0.0
> AT1G24265.3 | Symbols: | Protein of unknown function (DUF1664)
| chr1:8600477-8603801 FORWARD LENGTH=1388
Length=1388
Score = 1424 bits (771), Expect = 0.0
Identities = 931/1009 (92%), Gaps = 7/1009 (1%)
Strand=Plus/Plus
Query 44 GTCTTGTTGGGTCAGCATTTGCTAGAGAAGGGGGCTTACCAGATTTCTCGAATTTGGTTT 103
||||| |||| ||||||||| ||| ||||||||||||||||||| |||| ||||||||||
Sbjct 214 GTCTTATTGGATCAGCATTTTCTAAAGAAGGGGGCTTACCAGATGTCTCCAATTTGGTTT 273
Query 104 CTGGTGCTTTTAAGATGGTATTTAAGCAACTGAAACAAGAAGAACCTAGCAAATCAGCTA 163
|||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 274 CTGGTGCTTTTAAGATGGTATTCAGGCAACTGAAACAAGACGAACCTAGCAAATCAGCTA 333
Query 164 GCAAGCCCCACAATGATGTACTTGTGGCCCAGGTTAACAGTCTTAGGCATGAGATACAGT 223
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GCAAACCCCACGATGATGTACTTGTGGCCCAGGTTAACAGTCTTAGGCATGAGATACAGT 393
Query 224 TGCTGGGGTCAAACAGACCTATCACCATTGTTTCAACACCAGGATCAGGTGGTAAAAAGT 283
||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
Sbjct 394 TGCTGGGGTCAAACAGACCTATCACCATTGTTTCACCTTCAGGATCAGGTGGTAGAAACT 453
Query 284 ATGGTCTGATCATTATCGTTGGGGTGATAGGCTACGGATATGTGTGGTGGAAGGGCTGGA 343
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATGGTTTGATCATTATCGTTGGGGTGATAGGCTACGGATATGTGTGGTGGAAGGGCTGGA 513
Query 344 AACTTCCAGATTTTATGTTTGCGACAAGGCGTAGCTTATCAGATGCATGTGATAATGTTG 403
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 514 AACTTCCAGATTTTATGTTTGCAACAAGGCGTAGCTTATCAGATGCATGTAATAATGTTG 573
Query 404 GCAAACAGATCGATGGTTTTTACTCATCGCTCTCGGGTACAAAAC-AGGAGTTAGGTTCA 462
|||| ||||||||||||||||||||||| ||| ||||||||||| || ||||| |||||
Sbjct 574 GCAACCAGATCGATGGTTTTTACTCATCACTCAAGGGTACAAAACGAG-AGTTAAGTTCA 632
Query 463 CAAGTTGACAGGGTGGGTCGTCGTTTGGATGCAAATACGGAAGTTATTGAACAAACAGGA 522
|| |||| | | ||||||||||||||||||||||||| ||||| ||| || ||||| |
Sbjct 633 GAAATTGATATGATGGGTCGTCGTTTGGATGCAAATACAGAAGTAATTCAAGAAACAATA 692
Query 523 CGAGAGGTGACGGAA-CTACAGGATGGTACAGCAATTATAAAGGATGACGTTAAGTCTGT 581
| ||||||| | || ||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 693 CAAGAGGTGGCT-AAGCTACAGGATGGTACATCATTTATAAAGGATGACGTTAAGGCTGT 751
Query 582 TTTCGCTGCTGTTGAAACTCTGGCAAACAAAGTCTATCGTATTGAGGGAAATCAGGATAT 641
||||| |||| |||||| |||||||| |||||| | |||||| |||||||||||||||||
Sbjct 752 TTTCGATGCTTTTGAAAATCTGGCAAGCAAAGTGTGTCGTATAGAGGGAAATCAGGATAT 811
Query 642 CACGCTTAGGGGAGTTGGGGCTCTGCATGCTCAGTGTCGGGAGAACCAAAGAATTCAAGA 701
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 812 CACACTTAGAGGAGTTGGGGCTCTGCATGCTCAGTGTCAGGAGAACCAAAGAATTCAAGA 871
Query 702 GTCCAATAAGGCTTTGCCATCAACTTCATCAGTGCCAGCCCTTGAGGCAGCTCCTATGAC 761
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 872 GTCCAATAAGGCTTTGCCATCAACTTCATCACTGCCAGCCCTTGAGGCAGCTCCTATGGC 931
Query 762 ACCATCTTCAAGGACTCTGTCTTTACCTCCTGCTTCTCCTGATGAATCCCAGTCGCCGTC 821
||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 932 ACCCTCTTCAAAGACTCTGTCTTTACCTCCTGCTTCTCCCGATGAATCCCAGTCCCCGTC 991
Query 822 AACCCCTAATGGAGCTCAACAGTCACGGGGCCCACTTCAGCACACTCAATCTATGTCTGG 881
||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 992 AACCCCTAATGTAGCTCAAAAGTCACGGGGCCTACTTCAGCACACTCAATCTATGTCTGG 1051
Query 882 TTTGAAGGACATAAATGAAAGCTCTAGTAGCTGCGAGACGTCTTCGAATGGAATATATTC 941
||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||
Sbjct 1052 TTTGAAGGACATAAATGAAAGCTCTAGTAGCCACAACACGTCTTCAAATGGAATATATTT 1111
Query 942 TGGGGGAAACGGTGCATCAGGCTCGAGTTCAGGCGTGTTTGGTAGGTTCTCAATACCAAG 1001
||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||
Sbjct 1112 TGGGGGAAACGGTGCATCAGGATCGAGTTCGGGCGTGCTTGGTAGGTTCTCAATAGCAAG 1171
Query 1002 AATAGTGAGGACTCGTACTGTGGTCAACACAGTGCCTACTACTAACTGA 1050
|||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1172 AATAATGAGGACTCGTACTGTGGTCAACACAGTG--T-CTACTAACTGA 1217
> AT1G24267.2 | Symbols: | Protein of unknown function (DUF1664)
| chr1:8604069-8607484 REVERSE LENGTH=1660
Length=1660
Score = 1051 bits (569), Expect = 0.0
Identities = 798/907 (88%), Gaps = 21/907 (2%)
Strand=Plus/Plus
Query 1 ATGGCTATCCCTCTCGGGAAGCTCACTATCCTCATCGGCGCAGGTCTTGTTGGGTCAGCA 60
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 244 ATGGCTATTCCTCTCGGGAAGCTCACCATCCTCATCGGTGCAGGTCTTGTTGGGTCAGTA 303
Query 61 TTTGCTAGAGAAGGGGGCTTACCAGATTTCTCGAATTTGGTTTCTGGTGCTTTTAAGATG 120
|||||| ||||||| | ||||||||| |||||| ||| || || |||||| ||||||||
Sbjct 304 CTTGCTAAAGAAGGGAGTTTACCAGATGTCTCGAGTTTTGTCTCCGGTGCTCTTAAGATG 363
Query 121 GTATTTAAGCAACTGAAACAAGAAGAACCTAG-CAAATCAGCTAGCAAGCCCCACAATGA 179
||||||| ||| ||||| |||||||||||| | ||||||||| |||||||||| ||||||
Sbjct 364 GTATTTAGGCAGCTGAAGCAAGAAGAACCT-GCCAAATCAGCCAGCAAGCCCCGCAATGA 422
Query 180 TGTACTTGTGGCCCAGGTTAACAGTCTTAGGCATGAGATACAG-TTGCTGGGGTCAAACA 238
| ||| |||||||||||||||||||||||||||| || || ||||| |||||||
Sbjct 423 TACACTAATGGCCCAGGTTAACAGTCTTAGGCATGA-ATTGAGCTTGCTTTCTTCAAACA 481
Query 239 GACCTATCACCATTGTTTCAACACCAGGATCAGGTGGTAAAAAGTATGGTCT-GATCATT 297
|||||||||| |||||| | ||| |||||||||||||||||||||||||| | ||||||
Sbjct 482 GACCTATCACTATTGTTACCACAGCAGGATCAGGTGGTAAAAAGTATGGT-TACATCATT 540
Query 298 ATCGTTGGGGTGATAGGCTACGGATATGTGTGGTGGAAGGGCTGGAAACTTCCAGATTTT 357
|| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||
Sbjct 541 ATAATTGGGGTGATAGGCTACGGATATGTATGGTGGAAGGGCTGGAAACTTCCGGATCTT 600
Query 358 ATGTTTGCGACAAGGCGTAGCTTATCAGATGCATGTGATAATGTTGGCAAACAGATCGAT 417
|||||||| |||||||| |||||||||||||||||| ||| |||||||| |||||||||
Sbjct 601 ATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGTTGGCAGCCAGATCGAT 660
Query 418 GGTTTTTACTCATCGCTCTCGGGTA-CAAAACAGGAGTTAGGTTCACAAGTTGACAGGG- 475
||||||||| |||| |||||||||| ||||| | |||||| ||||| || ||||| |||
Sbjct 661 GGTTTTTACACATCACTCTCGGGTACCAAAA-AAGAGTTAAGTTCAAAAATTGAC-GGGA 718
Query 476 TGGGTCGTCGTTTGGATGCAAATACGGAAGTTATTGAACAAACAGGACGAGAGGTGACGG 535
|||||||| |||||||||| ||||| ||| ||||| || | |||||||||||||||| ||
Sbjct 719 TGGGTCGTAGTTTGGATGCTAATACAGAAATTATTCAAGATACAGGACGAGAGGTGATGG 778
Query 536 AACTAC-AGGATGGTACAGCAATTATAAAGGATGACGTTAAGTCTGTTTTCGCTGCTGTT 594
|||||| | || ||||| | || ||| |||||||||||||||| |||||||| |||||||
Sbjct 779 AACTACAAAGA-GGTACGGAAAATATTAAGGATGACGTTAAGTTTGTTTTCGATGCTGTT 837
Query 595 GAAACTCTGGCAA-ACAAA--G-TCTATCGTATTGAGGGAAATCAGGATATCACGCTTAG 650
|||| ||||| || | ||| | |||||||||||||||||||||||||||| || ||||
Sbjct 838 GAAAATCTGGTAAGA-AAATTGATCTATCGTATTGAGGGAAATCAGGATATTACACTTAA 896
Query 651 GGGAGTTGGGGCTCTGCATGCTCA-GTGTCGGGAGAACCAAAGAATTCAAGAGTCCAATA 709
||||| ||||| ||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 897 AGGAGTCGGGGCGCTGCATGCTCAGGT-TCGGGAGAACAAAAGAATTCAAGAGTCCAATA 955
Query 710 AGGCTTTGCCATCAACTTCATCAGTGCCAGCCCTTGAGGCAGCTCCTATGACACCATCTT 769
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 956 AGGCTTTACCATCAACTTCAGCAGTGCCAGCCCTTGAGGCAGCTCCTATGACACCATCGT 1015
Query 770 CAAGGACTCTGTCTTTACCTCCTGCTTCT-CCTGATGAATCCCAGTCGCCGTCAACCCCT 828
|||||||| ||||||| |||||||||||| || | |||||| |||||||| ||||| ||
Sbjct 1016 CAAGGACTTTGTCTTTGCCTCCTGCTTCTCCCCG-TGAATCTCAGTCGCCTTCAACTTCT 1074
Query 829 AATGGAGCTCAACAGTCACGGGGCCCACTTCAGCACACTCAATCTATGTCTGGTTTGAAG 888
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1075 AATGGAGCTCAACAGTCACGTGGTCCACTTCAGCACACTCAATCTATGTCTGGTTTGAAG 1134
Query 889 GACATAA 895
|| ||||
Sbjct 1135 GAGATAA 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5