BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912571
Length=1944
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27510.1 | Symbols: | Protein of unknown function (DUF3506)... 2931 0.0
> AT1G27510.1 | Symbols: | Protein of unknown function (DUF3506)
| chr1:9554745-9558367 REVERSE LENGTH=2230
Length=2230
Score = 2931 bits (1587), Expect = 0.0
Identities = 1845/1966 (94%), Gaps = 32/1966 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACAACTCATCCATGTCTTATCGGCCAAAGAATCTCTGTTCCTCAATTTCACCTC 60
|||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 75 ATGGCGACAACTCAACCATGTCTTATCGGCCAAATAATCGCTGTTCCTCAATTTCACATC 134
Query 61 CTCTTCAGCCCCAAAAATTCTCCAAATCCGGAGCTCTCCACCAACAAACGCACCAATTTC 120
||||||||||||| |||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct 135 CTCTTCAGCCCCAGAAATTCTCTAAAGCCGGAGCTCTCGACCAACAAACGCACAAATTTC 194
Query 121 TCCGTATCTATCGGCCTACGACATTCCTTCG---CTTCTATAACAACCTGGAACCCT-AA 176
|||||||||||||| |||||||||||||||| |||||||| ||||||| |||||| ||
Sbjct 195 TCCGTATCTATCGGTCTACGACATTCCTTCGCTTCTTCTATATCAACCTGTAACCCTAAA 254
Query 177 GAAACCGTCTTTAAGCTGTCTGCGAAATTGCGCCGCCGTTGATGGCGCAGATACCAGTTC 236
| || ||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 255 G-CCCCATCTTTAAGCTGTCTGCGAAATTGCGCCGCTGTTGATGGAGCTGATACTAGTTC 313
Query 237 GTGTGAGGATAA----G--TGGGATTGGGATCGTTGGAACCGCCACTTCTCCGAGATTGA 290
| |||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 314 GAGTGAGGATAAGTGGGATTGGGATTGGGATCGTTGGAACCGTCACTTCTCCGAGATTGA 373
Query 291 AGAAGTCGAGACCGTTGTTTCTCTTCTCAAGTCTCAACTTGAAGATGCTGTTGAAAAAGA 350
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 374 AGAAGTCGAGAGCGTTGTTTCTCTTCTCAAGTCTCAACTTGAGGATGCTGTTGAAAAAGA 433
Query 351 AGACTTTGAAGAAGCAGTAAAGTTGAAACAAGCTATTGCAGAAGCTACTGTTGATGATGC 410
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 434 AGACTTTGAAGAAGCAGTCAAGTTGAAACAAGCTATTTCAGAAGCTACTGTTGATGATGC 493
Query 411 TGTTGCTGAGATCATGCGCCAGTTACAGACTGCAATAAGCGAAGAGCGTTACCATGATGC 470
||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 494 TGTCGCTGAGATCATGCGCCAGTTACAGACTGCAGTAAACGAAGAGCGTTACCATGATGC 553
Query 471 TTCCAGGTTATGTAACGAGACAGGAAGTGGACTGGTGGGTTGGTGGGTTGG-TTATCCTC 529
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 554 TTCCAGGTTATGTAACGAGACAGGAAGTGGACTGGTGGGTTGGTGGGTTGGTTTA-CCTC 612
Query 530 GAGATTCTGAGGAACCATTTGGCAGAATTGTACACATAACTCCAGGTGTTGGTAGGTTTA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GAGATTCTGAGGAACCATTTGGCAGAATTGTACACATAACTCCAGGTGTTGGTAGGTTTA 672
Query 590 TTGGCAAGAGTTACAGTCCAAGACAGCTGGTGGCTGAAGCAGCTGGAACACCTCTGTTTG 649
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 673 TTGGCAAGAGTTACAGTCCAAGACAGCTGGTGGCTGAAGCAGCTGGAACACCCCTGTTTG 732
Query 650 AGATTTTCGTTGTTAAAGACACTGACGGAGGATATGTTATGCAGGTGGTGTATTTGCAAC 709
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 733 AGATTTTCGTTATTAAAGACACTGACGGAGGATATGTTATGCAGGTGGTGTATGTGCAAC 792
Query 710 ACGTGAAGCAAAACCTGTCCATTTCCGAGAATTCCTATTT-AAGAGCACAGCAATCATC- 767
|||||||||||||||| |||||||||||||||||| ||| || || ||||||||| ||
Sbjct 793 ACGTGAAGCAAAACCTAACCATTTCCGAGAATTCCT-TTTCAAAAGTACAGCAATCCTCG 851
Query 768 AAATACCTCAATCGATGACCCATCCATTCTAGATGTACGAGGAAGTGAACTGAAG-TCGG 826
|||| |||| ||| |||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 852 AAAT-CCTCGATCAATGACCCATCCATTTTAGATGTACGAGGAAGTGAACTGAAGGT-GG 909
Query 827 ATAAAAAAGAAGATATACAACTAAATTCTGGGGAACCAACTGAAGAAGGAATAAAAAATG 886
||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 910 ATAAAAAAGAAGATACACAACTAAATGCTGGGGAACCAACTGAAGAAGGAATTAAAAATG 969
Query 887 TGATAAAATTTCTAAAAGATAAAATCCCAGGGCTAAAACTGAAAGTAATGGATGTTATTA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TGATAAAATTTCTAAAAGATAAAATCCCAGGGCTAAAACTGAAAGTAATGGATGTTATTA 1029
Query 947 AAATCCCTGAGGAAGAGATCGTAGGCAGTGATG-CTGCTACTGAAGAGCTGGTTGGAGAA 1005
||||||||||||||||||| || |||||||||| | ||||||||||||||||||||||||
Sbjct 1030 AAATCCCTGAGGAAGAGATTGTTGGCAGTGATGAC-GCTACTGAAGAGCTGGTTGGAGAA 1088
Query 1006 GGCATTGAGGAAACAAATTCTTCCGATGATgaagaagaag-a-a-gaagaa-AA--TGAC 1059
|||| |||||||||||||||||| |||||||||||||||| | | |||||| || ||||
Sbjct 1089 GGCACTGAGGAAACAAATTCTTCTGATGATGAAGAAGAAGTAGAAGAAGAAGAAAATGAC 1148
Query 1060 AGTATTGAAGAAATCTCATCTATGGATAGTGCAGATTATGGAAAGCATTTAAACACTAAG 1119
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1149 AGTATTGAAGCAATCTCATCTATGGATAGTGCAGATTATGGAAAGCATTCAAACACTAAG 1208
Query 1120 CTTGTCATCGGAGGGGTTCTACATAACATAGAGGATTCCTCTATAGATGATGAGATTGAC 1179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1209 CTTGTCATCGGAGGGGTTCTACATAACATAGAGGATTCCTCTATAGATGATGAGATTGTC 1268
Query 1180 CGTGTCTCGGCAGATATAATGGATGCTGAAAGGGATTCCTTTATCTTGCACGTTCCTGGG 1239
||||| |||||| ||||||||||| ||||||| ||||||||||| ||||| |||||||||
Sbjct 1269 CGTGTGTCGGCAAATATAATGGATACTGAAAGAGATTCCTTTATATTGCATGTTCCTGGG 1328
Query 1240 AGAAGTAAGATTGATATCGATACAAGGAAAAACGGAGTGTCCAAGGAACAAGTAACAGCT 1299
|||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1329 AGAAGTAAGAGGGATATCGATACAAGGAAAAATAGAGTGTCCAAAGAACAAGTAACAGCT 1388
Query 1300 CTTGCAGCTCAAGGAATTTCAGATTTGATGCCACCAGAGGTTGCCAAGGCGTTCTGGGGT 1359
||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1389 CTTGCAGCTCAAGGACTTTCAGATCTGTTGCCACCAGAGGTTGCCGAGGCGTTCTGGGG- 1447
Query 1360 TCAGAAAAAGCTTCTTTGAAGGTATCGAGAA-ATGTGCGTGAGATTGTCAAGCTTGCTAT 1418
||| |||||||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 1448 --AGAGAAAGCTTCTTTGAAGGTATCGA-AACATGTGCATGAGATTGTCAAGCTTGCTAT 1504
Query 1419 AAATCAGGCGCAAAAAGGAAACCGTCTCTCGGAGTATACATCATTTAATAGAATCATAAC 1478
||| ||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 1505 AAACCAGGCACAAAAAGGAAACCATCTCTCCGAGTATACAGCATTTAATAGAATCATAAC 1564
Query 1479 TCCTGAAAGCAACCTAGACCCTTTTGATGGCCTATATGTGGGTGCATTCGGGCCTTATGG 1538
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1565 TCCTGAAAGCAACTTAGACCCTTTTGATGGTCTATATGTGGGTGCATTCGGGCCTTATGG 1624
Query 1539 CACTGAGATAGTGCAACTTAAGCGTAAGTATGGTCGGTGGAATGATGCAGAAGGAAGTAA 1598
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1625 CACCGAGATAGTGCAACTTAAGCGTAAGTATGGTCGGTGGGATGATGCAGAAGGAAGTAA 1684
Query 1599 CTCCTCAGATATAGAGTTCTTTGAATATGTTGAGGCTGTAAAGTTGACAGGGGATCCAAA 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 CTCCTCAGATATAGAGTTCTTTGAATATGTTGAGGCTGTAAAGTTGACAGGGGATCCAAA 1744
Query 1659 TGTGCCGGCTGGCGAGGTGACCTTCCGTGCAAGGATCGGGAATGGGAGTCGCATGACGAA 1718
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1745 TGTGCCGGCTGGCCAGGTGACATTCCGTGCAAGGATTGGGAATGGGAGTCGCATGACGAA 1804
Query 1719 TCATGGTTTGTTTCCAGAGGAATTGGGAGTGCTTGCGAGTTACAGAGGACAAGGAAGAAT 1778
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1805 TCATGGATTGTTTCCAGAGGAATTGGGAGTGCTTGCGAGTTACAGAGGGCAAGGAAAAAT 1864
Query 1779 CGCAGACTTTGGGTTTAAAAACCCAAAATGGGTCGAGGGCAAGCTTTTAAAACTCAACGG 1838
||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||
Sbjct 1865 CGCTGACTTTGGGTTTAAAAAGCCAAGATGGGTCGAGGGCAAGCTCTTAAAACTCAATGG 1924
Query 1839 AAAGGGAATGGGACCATATGTGAAGGGTGCGGATCTTGGATTTCTATATATTGGCCCTGA 1898
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1925 AAAGGGAATGGGACCATATGTGAAGGGCGCAGATCTTGGATTTCTATATATTGGCCCTGA 1984
Query 1899 GCAGAGTTTCTTGGTCGTTTTCAACCGTCTGAGACTGCCTGAGTGA 1944
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1985 GCAGAGTTTCTTGGTCCTTTTCAACCGTCTGAGACTGCCTGAGTGA 2030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96284645310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5