BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912575
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27500.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 628 1e-179
> AT1G27500.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:9551451-9554139 REVERSE LENGTH=2264
Length=2264
Score = 628 bits (340), Expect = 1e-179
Identities = 475/535 (89%), Gaps = 29/535 (5%)
Strand=Plus/Plus
Query 3 AGCTGTTTATTCG-AAGGAA-CTAATGGAAGGAGGGTCTGTTAGTGAACT-GCATTCTAA 59
||||||||||||| || || |||||||||||||||||||| |||| | |||||||||
Sbjct 110 AGCTGTTTATTCGAAATAAAGAAAATGGAAGGAGGGTCTGTTAATGAA-TCGCATTCTAA 168
Query 60 TGCGGACCAAATGTTTGACACAACGATAGAGGAGCTATGTAAGAATCTCTGCGAATTGCA 119
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 169 TGCGGACCAAATGTTTGACACAACTATAGAAGAGTTATGTAAGAATCTCTGCGAATTGCA 228
Query 120 GAGTTCTAATCAGTCTCCTTCAAGGCAGAGTTTTGGATCATATGGTGATGAGTCTAAGAT 179
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 229 GAGTTCTAATCAATCTCCTTCAAGGCAGAGTTTTGGATCATATGGTGATGAGTCAAAGAT 288
Query 180 TGATTCTGATCTACAACATCTTGCTTTGGGAGAAATGCGGGATATAGATATCTTGGAAGA 239
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 289 TGATTCTGATCTACAACATCTTGCTTTGGGAGAGATGCGAGATATTGATATCTTGGAAGA 348
Query 240 TGAAGGAGATGATGAGGACGAAGTGGCAAAGCCC-A----T---AT--CAAA-C---T-C 284
|||||||||||| | | |||||||||||||||| | | || ||| | | |
Sbjct 349 TGAAGGAGATGA-G-G-ACGAAGTGGCAAAGCCAGAAGAGTTTGATGTCAAGTCAAATTC 405
Query 285 TAT-AAAGTTGGATTTGGAGGTCTTGCCCAAGGATATGGAGAAACAAGTTGGTAAGAAGA 343
| | ||| ||||||||||| ||| |||||| |||||||||||||||| |||||||||||
Sbjct 406 T-TCAAACTTGGATTTGGAAGTCATGCCCAGGGATATGGAGAAACAAACTGGTAAGAAGA 464
Query 344 ATGTTAAC-AAATCGAACGTTGGAGGT-GGTGGAATGAGGAAGGAGAAAGTCGGAACCAC 401
|||| | | |||||||||||||||| | ||||||||||||||| ||||||||||| ||
Sbjct 465 ATGTGA-CTAAATCGAACGTTGGAG-TCGGTGGAATGAGGAAGAAGAAAGTCGGAGGTAC 522
Query 402 CAAGTTACGAACTGGAAATGAAGAACCATCATCTGAAAATGTAGAGCTGTCACGTTTTTT 461
|||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 523 CAAGTTACAAAATGGAAATGAAGAACCATCATCTGAAAATGTAGAGCTGGCACGTTTTTT 582
Query 462 ACTGAACCAAGCGAGAAACTTGGTTAGTTCTGGTGATAAGTACCCACAAAGCTCT 516
|||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 583 ACTGAACCAAGCGAGAAACTTGGTTAGTTCTGGTGACA-GTACACACAAAGCTCT 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5