BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912586

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26530.1 | Symbols:  | PIN domain-like family protein | chr1...   276    2e-73


> AT1G26530.1 | Symbols:  | PIN domain-like family protein | chr1:9165360-9167490 
FORWARD LENGTH=1259
Length=1259

 Score =  276 bits (149),  Expect = 2e-73
 Identities = 177/190 (93%), Gaps = 4/190 (2%)
 Strand=Plus/Plus

Query  1    ATGGGAA-GATCAAAGAAACCTCAAAAGTTTGCTGTAATGAA-AAAATTAATAAGCCACA  58
            ||||||| || |||||||||||||||||||||| |||||||| |  | | ||||||||||
Sbjct  531  ATGGGAAGGA-CAAAGAAACCTCAAAAGTTTGCAGTAATGAAGATGA-TGATAAGCCACA  588

Query  59   AAGCGTTGAAAGATTACAAGGAGGAGGCTCTGAATCCAAACAAGAAGGATCTCACTGAAC  118
            |||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct  589  AAGCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAAC  648

Query  119  TTCCAAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG  178
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  649  TTCCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG  708

Query  179  TTCCTCCTTA  188
            ||||||||||
Sbjct  709  TTCCTCCTTA  718


 Score =  237 bits (128),  Expect = 1e-61
 Identities = 139/144 (97%), Gaps = 1/144 (1%)
 Strand=Plus/Plus

Query  489   TTA-TCAGCATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTC  547
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  910   TTACTCAGCATAAATGCTTCATAGTAGCTACTTGTGATAGAGATCTAAAGCGAAGGATTC  969

Query  548   GCAAGATTCCTGGTGTACCAATCATGTATGCAACACGACGCAAGTACTCAATAGAGAAGC  607
             ||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| |
Sbjct  970   GCAAGATTCCTGGTGTACCAATCATGTATGTGACACAACGCAAGTACTCAATAGAGAAAC  1029

Query  608   TGCCTGAAGCAACAATCGGTGGAG  631
             ||||||||||||||||||||||||
Sbjct  1030  TGCCTGAAGCAACAATCGGTGGAG  1053


 Score =  141 bits (76),  Expect = 9e-33
 Identities = 93/101 (92%), Gaps = 2/101 (2%)
 Strand=Plus/Plus

Query  294  GATTGCAAAGGATCCACGATTTGAAAGACTACCTTGTGTACACAAAGGGACATATGCTGA  353
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  830  GATTGCAAAAGATCCACGATTTGAAAGACTACCTTGTGTACTCAAAGGGACATATGCTGA  889

Query  354  TGATTGTCTCGTTGACAGAGTTACTCAG-ATAA-TGCCTCA  392
            ||| ||||| || ||||||||||||||| |||| ||| |||
Sbjct  890  TGACTGTCTTGTGGACAGAGTTACTCAGCATAAATGCTTCA  930


 Score =  104 bits (56),  Expect = 1e-21
 Identities = 63/66 (95%), Gaps = 2/66 (3%)
 Strand=Plus/Plus

Query  195  GATTGATCTTGAGAAGGGAATGATGGACTGTTTGTACGCAAAATGCACTCCTTGTATCAC  254
            ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||
Sbjct  767  GATTGATCTTGAGAAGGGAATGATGG--TGTTTGTACGCAAAATGCACTCCTTGTATTAC  824

Query  255  GGACTG  260
            ||||||
Sbjct  825  GGACTG  830


 Score =  104 bits (56),  Expect = 1e-21
 Identities = 73/81 (90%), Gaps = 2/81 (2%)
 Strand=Plus/Plus

Query  674   AGCTCCAATATACTGATATAGGAAACGGA-ACCTATGTTGATTCCAAGAATTTTGGGAAG  732
             |||||||| ||||||||| ||| | | || ||| |||||||||||||||| |||||||||
Sbjct  1052  AGCTCCAAGATACTGATAAAGG-ATCCGACACCCATGTTGATTCCAAGAAGTTTGGGAAG  1110

Query  733   CCTAAGTTAGTGTTGGTTTAA  753
             |||||||||||||||||||||
Sbjct  1111  CCTAAGTTAGTGTTGGTTTAA  1131



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36570459016


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5