BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912628
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28020.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2508 0.0
AT1G28040.1 | Symbols: | RING/U-box superfamily protein | chr1... 152 1e-35
> AT1G28020.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:9768395-9771157 REVERSE LENGTH=1839
Length=1839
Score = 2508 bits (1358), Expect = 0.0
Identities = 1678/1829 (92%), Gaps = 36/1829 (2%)
Strand=Plus/Plus
Query 1 ATGGTATCATCTGTCCCATTTGTTTATCGGAATATGCTAGCAAAGAGACTGTACGGTGCA 60
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1 ATGGTATCATCTTTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACCGTACGGTGCA 60
Query 61 TACCAGAATGTGATCACTGTTTCCA---CGT---T---G----A------A--T---CAT 96
||||||||||||||||||||||||| ||| | | | | | |||
Sbjct 61 TACCAGAATGTGATCACTGTTTCCATGTCGTGGCTCAAGATTCATGGTTCATGTCCGCAT 120
Query 97 CGTATCACGGATGCTCTCCATCGGAATGCACAAATCATTCCAGTGCTAGAGCAATGGCGG 156
|||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||||
Sbjct 121 CGTATCACAGATGCTCTCCATCGAAATGCACAAATCATTCCGGTGCTAGAACAGTGGCGG 180
Query 157 CAGCAGGGTAATCAAGTGAACCCTTCGCACGTGAGAGTCATCATCAAAAAGCTTCGTGAT 216
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAACAGGGGAATCAAGTGAACCCTTCGCACGTGAGAGTCATCATCAAAAAGCTTCGTGAT 240
Query 217 TCTGACCAATCTCTCCAAGCCCTTCAGGTATCAGAGTGGATGAGTAAAGAAAAGATTTGC 276
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 TCCGACCAATCTCTCCAAGCCCTTCAGGTATCAGAGTGGATGAGTAAAGAAAAAATCTGC 300
Query 277 AATCTAATTCCAGAAGATTTTGCAGCTCGGCTTCATCTTATAGAGAATGTTGTAGGTTTA 336
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 301 AATCTAATCCCAGAAGATTTTGCAGCTCGGCTTCATCTGATAGAGAATGTTGTAGGGTTA 360
Query 337 GAAGAAGCAGAGAAGTTCTTCGAAAGTATTCCAAAGAACGCAAGAGACGATTCTGTTTAC 396
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 361 GAAGAAGCAGAGAAGTTCTTTGAAAGTATTCCAAAGAACGCAAGAGGCGATTCTGTTTAC 420
Query 397 ACCACTCTCTTAAACTGGTATGCAAGATCAGACAAAACTCTGTGTAAAGCCGAAGCCACG 456
||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACCTCTCTCTTAAACTCGTACGCAAGATCAGACAAAACTCTGTGTAAAGCCGAAGCCACG 480
Query 457 TTCCAGAAGATGAGGGAGTTAGGTCTCCTCTCGAGACCT-TCTCCTTACAACGCAATGAT 515
|||||||| |||||||| |||||||| |||| |||||| | ||||||||||||||||||
Sbjct 481 TTCCAGAAAATGAGGGACTTAGGTCTTCTCTTAAGACCTGT-TCCTTACAACGCAATGAT 539
Query 516 GTCTCTCTACATTGCACTAAATGATCGAGAAAAAGTGGAAGAGCTTTTGCGTGAGATGAA 575
||||||||||| ||||||||| |||| |||||||| || |||||||||| |||||||||
Sbjct 540 GTCTCTCTACAGTGCACTAAAAAATCGTGAAAAAGTCGAGGAGCTTTTGCTTGAGATGAA 599
Query 576 AGATAATGACGTGGAGGCCGATAGTATCACAGTAAACAACGTGTTGAAGCTATACTCGGC 635
|||||| ||||||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct 600 AGATAACGACGTGGAGGCGGATAATGTCACAGTGAACAACGTGTTGAAGCTATACTCGGC 659
Query 636 TGTGTGTGACGTGACCGCGATGGAGAAGTTTTTGAATAAGTGGGAAGGGATTAATGGGAT 695
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 660 TGTGTGTGACGTGACCGAGATGGAGAAGTTTTTGAATAAGTGGGAAGGGATTCATGGGAT 719
Query 696 CAAACTTGAGTGGCTTACGACTCTTGACATGGCAAAGGCTTACCTGCGAGCCCGTTCAAA 755
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAAACTTGAGTGGCATACGACTCTTGACATGGCAAAGGCTTACCTGCGAGCCCGTTCAAG 779
Query 756 TGGAAAGGCTATCAAAATGCTGCGTTTAACAGAGGAATTGGCGGATC-GTAAGTCGCTAA 814
||||||||| || ||||||||||||||||||||| |||||| ||||| | |||||| |||
Sbjct 780 TGGAAAGGCAATGAAAATGCTGCGTTTAACAGAGCAATTGGTGGATCAG-AAGTCGTTAA 838
Query 815 AATCAGCTTACGACCATCTCATGAAGCTGTATGGTGAAGCTGGAAACAGAGAAGAGGTTG 874
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATCAGCTTACGACCATCTTATGAAGCTGTATGGTGAAGCTGGAAACAGAGAAGAGGTTT 898
Query 875 TACGTATATGGAACCTTTACAAGATG-AACATAGGACAACGTGATAACAAGGGTTACCGA 933
||||| ||||||| |||||||||| | || |||||| ||||||||||||| |||||||||
Sbjct 899 TACGTGTATGGAAACTTTACAAGA-GTAAGATAGGAGAACGTGATAACAATGGTTACCGA 957
Query 934 ACTGTGATCCGTTCTCTCTTGAAGGTAGACGATATTTTTGGGGCAGAAGAGATATACAAA 993
|| ||||| ||||| || ||||| ||||| ||||| |||| ||||||||||| ||||||
Sbjct 958 ACAGTGATTCGTTCGCTTTTGAAAGTAGATGATATCGTTGGAGCAGAAGAGATCTACAAA 1017
Query 994 GTGTGGGAATCGTTGTCACTTGAGTTTGAT-ATCCGAATCCCGACTATGTTGGCCTCTGG 1052
||||||||||| ||| |||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1018 GTGTGGGAATCTTTGCCACTTGAGTTTGATCAT-CGAATCCCGACAATGTTGGCCTCTGG 1076
Query 1053 TTATCGAGAGAGAGGAATGACAGAGAAGGCTGAGAAACTCATAAACAGTAAAACCATTAA 1112
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 TTATCGAGACAGAGGAATGACAGAGAAGGCTGAGAAACTCATGAACAGTAAAACCATTAA 1136
Query 1113 GGACAGAAAAATGAATAAGCCCGTCACTCCGCTTTTGGAGCAATGGGGAGATCAAATGAA 1172
|||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 GGACAGAAGAATGAATAAACCCGTCACTCCGCTTCTGGAGCAATGGGGAGATCAAATGAA 1196
Query 1173 ACCGTCTGATCTTAAATGCCTTATCAAGAATCTCCGTGATTCCAATCAGTTTTCTAAAGC 1232
|||||||||||| |||||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 1197 ACCGTCTGATCTCAAATGCCTCATCAAGAATCTCCGTGATTCCAAACAGTTCTCAAAAGC 1256
Query 1233 ACTTCAGGTTTCCGAATGGATGGGTGAAAAACGGGTTTGTGATCTTTATTCGGAAGATTA 1292
||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 1257 CCTTCAGGTTTCCGAATGGATGGGTGAAAAACAAGTTTGTAATCTTTATTTGGAAGATTA 1316
Query 1293 TGCAGCTAGGCTTTACCTGACTGAGAATGTGTTGGGTTTGGAAAAAGCAGAGAAGTACTT 1352
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1317 TGCAGCTAGGCTTTACCTGACTGAGAATGTTTTGGGTTTGGAAGAAGCAGAGAAGTACTT 1376
Query 1353 TGAAAACATCCCTGAGAACATGAAGGATTACTCTGTCTACGTAGCTCTCTTAAGCTCTTA 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TGAAAACATCCCTGAGAACATGAAGGATTACTCTGTCTACGTAGCTCTCTTAAGCTCTTA 1436
Query 1413 CGCGAAATCTGACAAAAATTTGGAAAATATGGTGGAGGAGATTCTTCGTGAGATGGAGGA 1472
||||||||| || ||||| |||| ||| |||||||| |||||||||||||||||||||||
Sbjct 1437 CGCGAAATCCGATAAAAACTTGGGAAACATGGTGGATGAGATTCTTCGTGAGATGGAGGA 1496
Query 1473 GAACAACGTGGATCCTGATAGTATCACGGTGAACTATGTTTTAAAGGTATACGCGGCTGC 1532
||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||| |
Sbjct 1497 GAACAACGTGGATCCTGATCTTATCACGGTCAACCATGTTTTAAAGGTGTACGCGGCAGA 1556
Query 1533 ATCAAAGGTAGAAGCAATGGAAATGTTTATGAGACATTGGGCGGTAGAGATGTATGGTAA 1592
||||||| || |||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 1557 ATCAAAGATACAAGCAATGGAAATGTTTATGAGACGTTGGGCGGTAGAGGTGTATGGTGA 1616
Query 1593 TGTGGCA-GGTTGTAAAAGAGAGGTGCACAATCTTTGGGAAGAATGTAAGAATAAGAAGG 1651
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1617 TGTGGCACGGT-GTAAAAGAGAGGTGCACAATCTTTGGGACGAATGTAAGAATAACAAGG 1675
Query 1652 AAGAAAAAGTGGGGGATGGTAAGGAATGTTTAAATGTGGTTAGCA-CTTTGTTGAAGATG 1710
||||| |||||| ||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 1676 AAGAAGAAGTGGAGGATGGTAAAAAACGTTTACCTGTGGTTA-CAACTTTGTTGAAGATG 1734
Query 1711 GACGATGATGGATATCGAACTGTGATTAGCTCTTTGTTGAAGCTGGATGATGTACAAGGA 1770
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1735 GACGATGATGGATATCGAACTGTGATTAGTTCTTTGTTGAAGCTGGACGATGTACAAGGA 1794
Query 1771 GCAGAGAAGGTATATGGAGAGTGGAAACC 1799
| |||||||||||| ||||||||||||||
Sbjct 1795 GTAGAGAAGGTATACGGAGAGTGGAAACC 1823
> AT1G28040.1 | Symbols: | RING/U-box superfamily protein | chr1:9773580-9775481
REVERSE LENGTH=1471
Length=1471
Score = 152 bits (82), Expect = 1e-35
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1 ATGGTATCATCTGTCCCATTTGTTTATCGGAATATGCTAGCAAAGAGACTGTACGGTGCA 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1317 ATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACTGTACGGTGCA 1376
Query 61 TACCAGAATGTGATCACTGTTTCCACGT 88
| ||||||||||||||||||||||||||
Sbjct 1377 TGCCAGAATGTGATCACTGTTTCCACGT 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99296678010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5