BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg912628 Length=2004 Score E Sequences producing significant alignments: (Bits) Value AT1G28020.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2508 0.0 AT1G28040.1 | Symbols: | RING/U-box superfamily protein | chr1... 152 1e-35 > AT1G28020.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:9768395-9771157 REVERSE LENGTH=1839 Length=1839 Score = 2508 bits (1358), Expect = 0.0 Identities = 1678/1829 (92%), Gaps = 36/1829 (2%) Strand=Plus/Plus Query 1 ATGGTATCATCTGTCCCATTTGTTTATCGGAATATGCTAGCAAAGAGACTGTACGGTGCA 60 |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1 ATGGTATCATCTTTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACCGTACGGTGCA 60 Query 61 TACCAGAATGTGATCACTGTTTCCA---CGT---T---G----A------A--T---CAT 96 ||||||||||||||||||||||||| ||| | | | | | ||| Sbjct 61 TACCAGAATGTGATCACTGTTTCCATGTCGTGGCTCAAGATTCATGGTTCATGTCCGCAT 120 Query 97 CGTATCACGGATGCTCTCCATCGGAATGCACAAATCATTCCAGTGCTAGAGCAATGGCGG 156 |||||||| |||||||||||||| ||||||||||||||||| |||||||| || |||||| Sbjct 121 CGTATCACAGATGCTCTCCATCGAAATGCACAAATCATTCCGGTGCTAGAACAGTGGCGG 180 Query 157 CAGCAGGGTAATCAAGTGAACCCTTCGCACGTGAGAGTCATCATCAAAAAGCTTCGTGAT 216 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAACAGGGGAATCAAGTGAACCCTTCGCACGTGAGAGTCATCATCAAAAAGCTTCGTGAT 240 Query 217 TCTGACCAATCTCTCCAAGCCCTTCAGGTATCAGAGTGGATGAGTAAAGAAAAGATTTGC 276 || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 241 TCCGACCAATCTCTCCAAGCCCTTCAGGTATCAGAGTGGATGAGTAAAGAAAAAATCTGC 300 Query 277 AATCTAATTCCAGAAGATTTTGCAGCTCGGCTTCATCTTATAGAGAATGTTGTAGGTTTA 336 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 301 AATCTAATCCCAGAAGATTTTGCAGCTCGGCTTCATCTGATAGAGAATGTTGTAGGGTTA 360 Query 337 GAAGAAGCAGAGAAGTTCTTCGAAAGTATTCCAAAGAACGCAAGAGACGATTCTGTTTAC 396 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 361 GAAGAAGCAGAGAAGTTCTTTGAAAGTATTCCAAAGAACGCAAGAGGCGATTCTGTTTAC 420 Query 397 ACCACTCTCTTAAACTGGTATGCAAGATCAGACAAAACTCTGTGTAAAGCCGAAGCCACG 456 ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 421 ACCTCTCTCTTAAACTCGTACGCAAGATCAGACAAAACTCTGTGTAAAGCCGAAGCCACG 480 Query 457 TTCCAGAAGATGAGGGAGTTAGGTCTCCTCTCGAGACCT-TCTCCTTACAACGCAATGAT 515 |||||||| |||||||| |||||||| |||| |||||| | |||||||||||||||||| Sbjct 481 TTCCAGAAAATGAGGGACTTAGGTCTTCTCTTAAGACCTGT-TCCTTACAACGCAATGAT 539 Query 516 GTCTCTCTACATTGCACTAAATGATCGAGAAAAAGTGGAAGAGCTTTTGCGTGAGATGAA 575 ||||||||||| ||||||||| |||| |||||||| || |||||||||| ||||||||| Sbjct 540 GTCTCTCTACAGTGCACTAAAAAATCGTGAAAAAGTCGAGGAGCTTTTGCTTGAGATGAA 599 Query 576 AGATAATGACGTGGAGGCCGATAGTATCACAGTAAACAACGTGTTGAAGCTATACTCGGC 635 |||||| ||||||||||| |||| | ||||||| |||||||||||||||||||||||||| Sbjct 600 AGATAACGACGTGGAGGCGGATAATGTCACAGTGAACAACGTGTTGAAGCTATACTCGGC 659 Query 636 TGTGTGTGACGTGACCGCGATGGAGAAGTTTTTGAATAAGTGGGAAGGGATTAATGGGAT 695 ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 660 TGTGTGTGACGTGACCGAGATGGAGAAGTTTTTGAATAAGTGGGAAGGGATTCATGGGAT 719 Query 696 CAAACTTGAGTGGCTTACGACTCTTGACATGGCAAAGGCTTACCTGCGAGCCCGTTCAAA 755 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CAAACTTGAGTGGCATACGACTCTTGACATGGCAAAGGCTTACCTGCGAGCCCGTTCAAG 779 Query 756 TGGAAAGGCTATCAAAATGCTGCGTTTAACAGAGGAATTGGCGGATC-GTAAGTCGCTAA 814 ||||||||| || ||||||||||||||||||||| |||||| ||||| | |||||| ||| Sbjct 780 TGGAAAGGCAATGAAAATGCTGCGTTTAACAGAGCAATTGGTGGATCAG-AAGTCGTTAA 838 Query 815 AATCAGCTTACGACCATCTCATGAAGCTGTATGGTGAAGCTGGAAACAGAGAAGAGGTTG 874 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 839 AATCAGCTTACGACCATCTTATGAAGCTGTATGGTGAAGCTGGAAACAGAGAAGAGGTTT 898 Query 875 TACGTATATGGAACCTTTACAAGATG-AACATAGGACAACGTGATAACAAGGGTTACCGA 933 ||||| ||||||| |||||||||| | || |||||| ||||||||||||| ||||||||| Sbjct 899 TACGTGTATGGAAACTTTACAAGA-GTAAGATAGGAGAACGTGATAACAATGGTTACCGA 957 Query 934 ACTGTGATCCGTTCTCTCTTGAAGGTAGACGATATTTTTGGGGCAGAAGAGATATACAAA 993 || ||||| ||||| || ||||| ||||| ||||| |||| ||||||||||| |||||| Sbjct 958 ACAGTGATTCGTTCGCTTTTGAAAGTAGATGATATCGTTGGAGCAGAAGAGATCTACAAA 1017 Query 994 GTGTGGGAATCGTTGTCACTTGAGTTTGAT-ATCCGAATCCCGACTATGTTGGCCTCTGG 1052 ||||||||||| ||| |||||||||||||| || ||||||||||| |||||||||||||| Sbjct 1018 GTGTGGGAATCTTTGCCACTTGAGTTTGATCAT-CGAATCCCGACAATGTTGGCCTCTGG 1076 Query 1053 TTATCGAGAGAGAGGAATGACAGAGAAGGCTGAGAAACTCATAAACAGTAAAACCATTAA 1112 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1077 TTATCGAGACAGAGGAATGACAGAGAAGGCTGAGAAACTCATGAACAGTAAAACCATTAA 1136 Query 1113 GGACAGAAAAATGAATAAGCCCGTCACTCCGCTTTTGGAGCAATGGGGAGATCAAATGAA 1172 |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1137 GGACAGAAGAATGAATAAACCCGTCACTCCGCTTCTGGAGCAATGGGGAGATCAAATGAA 1196 Query 1173 ACCGTCTGATCTTAAATGCCTTATCAAGAATCTCCGTGATTCCAATCAGTTTTCTAAAGC 1232 |||||||||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 1197 ACCGTCTGATCTCAAATGCCTCATCAAGAATCTCCGTGATTCCAAACAGTTCTCAAAAGC 1256 Query 1233 ACTTCAGGTTTCCGAATGGATGGGTGAAAAACGGGTTTGTGATCTTTATTCGGAAGATTA 1292 ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| Sbjct 1257 CCTTCAGGTTTCCGAATGGATGGGTGAAAAACAAGTTTGTAATCTTTATTTGGAAGATTA 1316 Query 1293 TGCAGCTAGGCTTTACCTGACTGAGAATGTGTTGGGTTTGGAAAAAGCAGAGAAGTACTT 1352 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 1317 TGCAGCTAGGCTTTACCTGACTGAGAATGTTTTGGGTTTGGAAGAAGCAGAGAAGTACTT 1376 Query 1353 TGAAAACATCCCTGAGAACATGAAGGATTACTCTGTCTACGTAGCTCTCTTAAGCTCTTA 1412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 TGAAAACATCCCTGAGAACATGAAGGATTACTCTGTCTACGTAGCTCTCTTAAGCTCTTA 1436 Query 1413 CGCGAAATCTGACAAAAATTTGGAAAATATGGTGGAGGAGATTCTTCGTGAGATGGAGGA 1472 ||||||||| || ||||| |||| ||| |||||||| ||||||||||||||||||||||| Sbjct 1437 CGCGAAATCCGATAAAAACTTGGGAAACATGGTGGATGAGATTCTTCGTGAGATGGAGGA 1496 Query 1473 GAACAACGTGGATCCTGATAGTATCACGGTGAACTATGTTTTAAAGGTATACGCGGCTGC 1532 ||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||| | Sbjct 1497 GAACAACGTGGATCCTGATCTTATCACGGTCAACCATGTTTTAAAGGTGTACGCGGCAGA 1556 Query 1533 ATCAAAGGTAGAAGCAATGGAAATGTTTATGAGACATTGGGCGGTAGAGATGTATGGTAA 1592 ||||||| || |||||||||||||||||||||||| ||||||||||||| |||||||| | Sbjct 1557 ATCAAAGATACAAGCAATGGAAATGTTTATGAGACGTTGGGCGGTAGAGGTGTATGGTGA 1616 Query 1593 TGTGGCA-GGTTGTAAAAGAGAGGTGCACAATCTTTGGGAAGAATGTAAGAATAAGAAGG 1651 ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1617 TGTGGCACGGT-GTAAAAGAGAGGTGCACAATCTTTGGGACGAATGTAAGAATAACAAGG 1675 Query 1652 AAGAAAAAGTGGGGGATGGTAAGGAATGTTTAAATGTGGTTAGCA-CTTTGTTGAAGATG 1710 ||||| |||||| ||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 1676 AAGAAGAAGTGGAGGATGGTAAAAAACGTTTACCTGTGGTTA-CAACTTTGTTGAAGATG 1734 Query 1711 GACGATGATGGATATCGAACTGTGATTAGCTCTTTGTTGAAGCTGGATGATGTACAAGGA 1770 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1735 GACGATGATGGATATCGAACTGTGATTAGTTCTTTGTTGAAGCTGGACGATGTACAAGGA 1794 Query 1771 GCAGAGAAGGTATATGGAGAGTGGAAACC 1799 | |||||||||||| |||||||||||||| Sbjct 1795 GTAGAGAAGGTATACGGAGAGTGGAAACC 1823 > AT1G28040.1 | Symbols: | RING/U-box superfamily protein | chr1:9773580-9775481 REVERSE LENGTH=1471 Length=1471 Score = 152 bits (82), Expect = 1e-35 Identities = 86/88 (98%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1 ATGGTATCATCTGTCCCATTTGTTTATCGGAATATGCTAGCAAAGAGACTGTACGGTGCA 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1317 ATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACTGTACGGTGCA 1376 Query 61 TACCAGAATGTGATCACTGTTTCCACGT 88 | |||||||||||||||||||||||||| Sbjct 1377 TGCCAGAATGTGATCACTGTTTCCACGT 1404 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99296678010 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5