BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912645
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28170.1 | Symbols: SOT7 | sulphotransferase 7 | chr1:984133... 1321 0.0
> AT1G28170.1 | Symbols: SOT7 | sulphotransferase 7 | chr1:9841332-9842312
FORWARD LENGTH=981
Length=981
Score = 1321 bits (715), Expect = 0.0
Identities = 902/991 (91%), Gaps = 17/991 (2%)
Strand=Plus/Plus
Query 1 ATGGATGAGACCGAGATCCCAAAGAAACTGCAAAACGAGGATGAAGAAACCATAAGTTTG 60
|||||||||||| ||||||||||||||||||||| ||| || ||||||| ||||||||||
Sbjct 1 ATGGATGAGACCAAGATCCCAAAGAAACTGCAAAGCGATGACGAAGAAAACATAAGTTTG 60
Query 61 ATCTCTTCACTTCCCTTAGACGTAGATTTCGATGGCACGAAGCTGTTCAAGTACCAAGGA 120
|| |||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||
Sbjct 61 ATTTCTTCACTTCCCTTTGACGTAGATTTCGACAGCACGAAGCTCTTCAAATACCAAGGA 120
Query 121 TATTGGTACAACGACAAAACCCTGCAAGGAGTCCTCCATTTCCAAAGAGGTTTCGAGCCA 180
| ||||||| |||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 121 TGTTGGTACGACGACAAAACTCTGCAAGGAGTCCTCAATTTTCAAAGAGGTTTCGAGCCA 180
Query 181 AAAGACATGGACATAATCATTGCCTCGTTCCCCAAATCTGGTACTACTTGGCTCAAAGCT 240
|||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 CAAGACACCGATATAATTATTGCTTCGTTCCCCAAATCTGGCACTACTTGGCTCAAAGCT 240
Query 241 CTCACCGTAGATCTCCTCGAGAGATCCAAACAGAAACACTCTTCTGATGATCATCCTCTT 300
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCACGGTAGCTCTCCTCGAGAGATCCAAACAGAAACACTCTTCTGATGATCATCCTCTT 300
Query 301 CTCCTTGATAATCCTCATGGCCTTGTACCATTCCTCGAGCTCAGGCTGTTCACGGAGACC 360
|| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 301 CTACTTGATAATCCTCATGGACTGGTACCATTCCTCGAGCTCAGGCTGTTCACTGAGACC 360
Query 361 TCGAAACCAGATCTGACCACTATCTCATCATCACTAAGGTTGTTCTCGACTCATATGGGG 420
||||||||||||||||||| ||||||||| || | ||||| || ||||||||| ||| |
Sbjct 361 TCGAAACCAGATCTGACCAGTATCTCATCGTCGCCGAGGTTATTTTCGACTCATGTGGCG 420
Query 421 TTCCAAACACTGCGAGAGGCTCTCAAGAACTCTCCTTGTAAGATCGTGTACGTGGGGAGG 480
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 421 TTCCAAACGCTGCGAGAGGCTCTCAAAAACTCTCCTTGTAAGATCGTTTACGTGTGGAGG 480
Query 481 AACATGAAAGACGTACTGGTGTCGTTTTGGTA-TACTAACTGCGCACAACTAAAGATAGA 539
||| |||||||||||||||||||||||||||| | | ||| ||||| |||||||||||||
Sbjct 481 AACGTGAAAGACGTACTGGTGTCGTTTTGGTATTTC-AACAGCGCAAAACTAAAGATAGA 539
Query 540 AGTGGAGAGAAGCATTTTGGATTCAATAATGTTCGAGTCCTTTTGCAGAGGAGTTATCAA 599
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 AGAGGAGAGAAGCATTTTGGATTC---AATGTTCGAGTCCTTTTGCAGAGGAGTTATCAA 596
Query 600 TTACGGATCATCATGGGAACATGTCTTGAACTATTGGAGAGCAAGCTTGGAAGACTCCAA 659
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTACGGACCATCCTGGGAACATGTCTTGAACTATTGGAGAGCAAGCTTGGAAGACTCCAA 656
Query 660 GTATGTGCTTTTCTTGAAGTACGAGGAGTTGAAAA-AGGAGCCTCGTGAT-CAGCTCAAT 717
| |||||||||||||||||||||||||||| |||| || | ||||| | | ||||| ||
Sbjct 657 GAATGTGCTTTTCTTGAAGTACGAGGAGTTAAAAACAGAA-CCTCGCG-TGCAGCTGAAG 714
Query 718 ATACTTGCCGAGTTCTTGGGTTGTCCTTTTACAGTGGAAGAAGAAGAGAGCGGATCAGTG 777
| ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct 715 AGACTTGCCGAGTTCTTGGATTGTCCTTTTACGGTGGAAGAAGAAGAGAGGGGATCAGTG 774
Query 778 GAAGAGATACTAG-ACCTTTGCTCATTTG-GTAACCTGAAGAATTTGGAGATCAACAAGA 835
|||||||| || | ||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 775 GAAGAGAT-CTTGGACCTTTGCTCATT-GCGTAACTTGAAGAATTTGGAGATCAACAAGA 832
Query 836 CCGGAAAAACTCTTAAAGGGCCCGAGCACAAGAAtttttttCGTGAAGGGGAAGTCGGTG 895
|||||||||| |||| ||| |||| ||||||| |||||||||| |||||||||||||||
Sbjct 833 CCGGAAAAACGCTTAGGGGGGCCGATCACAAGATTTTTTTTCGTAAAGGGGAAGTCGGTG 892
Query 896 ACTCCAAGAATTATCTGACTCCTGAAATGGAGAAGATAATTGACATGATTA-TCGAGGAG 954
|||| |||||| ||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 893 ACTCGAAGAATCATCTGACTCCTGAAATGGAGAAGATAATTGACATGATCACT-GAGGAG 951
Query 955 AAATTTCGA-GGTTCGGATTTAAAATTCTGA 984
|||||| || ||||||||||| |||||||||
Sbjct 952 AAATTT-GAAGGTTCGGATTTGAAATTCTGA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5