BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912665
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28327.1 | Symbols: | unknown protein; Has 52 Blast hits to... 750 0.0
> AT1G28327.1 | Symbols: | unknown protein; Has 52 Blast hits
to 52 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:9931934-9933451 FORWARD
LENGTH=1267
Length=1267
Score = 750 bits (406), Expect = 0.0
Identities = 565/638 (89%), Gaps = 26/638 (4%)
Strand=Plus/Plus
Query 4 GTCAAAGTTAGAGGACTTGCTTCTTCTTCTGGTGATGGAGATAGTCCATCTTATCCATCT 63
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |
Sbjct 403 GTCAAAGTTAGAGGACTTACTTCTTCTTCTGGTGATGGAGATAGTCTATCTTACCCATTT 462
Query 64 GAGAATCAAACTACCATTCGTGAA-AGAGAAAAAGCTCGTTTAATG-TATGAAATTTTTG 121
|| ||| |||||||||||||| || |||||||||| |||||||||| | |||||||||||
Sbjct 463 GAAAATGAAACTACCATTCGT-AACAGAGAAAAAGATCGTTTAATGCT-TGAAATTTTTG 520
Query 122 GTCCTGAAATCACGGATGATAGTGATGAAAATGGCTCTGAAGAAGAATTTATGGAGACCA 181
| ||||||| |||||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 521 GGCCTGAAAGCACGGATGATAGTGATGAAAGTGGCACTGAAGAAGAATTCATGGAGACCA 580
Query 182 ACTTATTGCCCTTGGTGCCCTTGGAGAGTCTGAAATGGGGAAAACGTGGAAAACGCAGCA 241
||||| | || |||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 581 ACTTA------AT-GT--CCTTGGTGAGTCTGCAATGGGGAAAACGTGGGAAACGCAGCA 631
Query 242 TGCGT-AGTGGCACATGCAAAAGACACATGCTAGAAAATCATGTTGAACAACA-TAAAA- 298
||||| || |||||||| ||||||||||| || ||||||||||||| |||||| ||||
Sbjct 632 TGCGTAAG-GGCACATGGAAAAGACACATACTCGAAAATCATGTTGGACAACACAAAAAT 690
Query 299 A-T--A-ATGAGATGGATATTCAAGTCTTGCTTGTTTCAATGGATACGTCAGTGATACCA 354
| | | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 691 ACTCAAGATGAGATGGACATTCAAGTCTTGCTTGTTTCAATGGATGCGTCAGTGATACCA 750
Query 355 AATTTGCAGAATCCTCAAGTAAGCTGCAAACCTAACGTGACAATGAAGTCACTATGTGAG 414
|||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 751 AATTTGCAGAATCCTCAAGTCAGCTGCAAACCTAACGTGACATTGAAGTCATTATGTGAG 810
Query 415 ATGTACGTTGCTCCTTACGTTGAGGCACAAGTTGAAGAA-ATCGAGATGTTTGTGGTTAA 473
||||||||||||||||||||||||||||||| |||| || || ||||||| |||||||||
Sbjct 811 ATGTACGTTGCTCCTTACGTTGAGGCACAAGCTGAA-AAGATTGAGATGTATGTGGTTAA 869
Query 474 CGAGTTGGTGACAGAGTCGAGAGTGATTGATCCCCACAAAGACAGAGTACAAATTGTGAA 533
||||||||| |||||| || | ||||||||||||||| |||||||||| | ||||||||
Sbjct 870 AGAGTTGGTGGCAGAGTTGACAATGATTGATCCCCACAGAGACAGAGTAGAGATTGTGAA 929
Query 534 GAAAGAAGACAATGTTGGTGGATTGATGAGAATGTATGACTTCAACAAGGGACATGTGAT 593
|| ||||||| |||||||||||||| || | ||||| |||||||||| ||| |||||||
Sbjct 930 CAAGGAAGACAGTGTTGGTGGATTGA-GA-A-TGTATAACTTCAACAATGGATATGTGAT 986
Query 594 TATTGGCTATATGAAGACTCCTTCAGATAACCAAGAGT 631
|||||| ||||||||||| |||| |||||| |||||||
Sbjct 987 TATTGGATATATGAAGACACCTTAAGATAATCAAGAGT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5