BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912687
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28550.1 | Symbols: AtRABA1i, RABA1i | RAB GTPase homolog A1... 1048 0.0
AT2G33870.1 | Symbols: ArRABA1h | RAB GTPase homolog A1H | chr2... 715 0.0
> AT1G28550.1 | Symbols: AtRABA1i, RABA1i | RAB GTPase homolog
A1I | chr1:10036966-10037698 REVERSE LENGTH=657
Length=657
Score = 1048 bits (567), Expect = 0.0
Identities = 627/657 (95%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGCATATAGAGCAGAAGACGATTACGATTACCTCTTCAAGGTGGTCTTAACCGGA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGCATATAGAGCAGAAGACGATTATGATTACCTCTTCAAGGTGGTCTTAACCGGA 60
Query 61 GATTCCGGCGTCGGAAAATCTAATTTGTTATCTCGTTTCACCAGAAATGATTTCAGCCAC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTCCGGCGTCGGGAAATCTAATTTGTTATCTCGTTTCACCAGAAATGATTTCAGCCAC 120
Query 121 GACTCACGTGCGACCATCGGTGTCGAATTCGCCACCCGTAGCATCCAATGCGATGATAAG 180
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 GACTCACGTGCAACCATCGGTGTCGAATTCGCCACACGAAGCATCCAATGCGATGATAAG 180
Query 181 ATTGTTAAGGCTCAAATCTGGGATACCGCCGGCCAAGAAAGGTACCGAGCCATCACGAGC 240
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGTCAAGGCTCAAATATGGGATACCGCCGGCCAAGAAAGGTACCGAGCCATCACGAGC 240
Query 241 GCTTATTACCGAGGAGCCGTTGGTGCATTGCTTGTTTATGACGTGACGCGTCACGTAACT 300
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 241 GCTTATTACCGAGGAGCTGTTGGTGCATTGCTTGTTTATGACGTGACGCGCCACGTGACA 300
Query 301 TTCGAGAACGTCGAGAGATGGCTAAAGGAGCTAAGGGACCACACGGACGCAAATATTGTT 360
|||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 301 TTCGAGAATGTTGAGAGATGGCTAAAGGAGCTTAGGGACCACACGGACGCAAACATTGTG 360
Query 361 ATTATGCTCGTTGGTAACAAAGCTGATCTTCGTCACCTTCGAGCCATCTCAACTGAAGAA 420
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 ATCATGCTCGTTGGCAACAAAGCTGATCTTCGTCACCTTCGAGCCATCTCAACCGAAGAA 420
Query 421 GCTAAGGCTTTTGCAGAGAGAGAGAATACCTTTTTCATGGAGACATCTGCACTTGAAGCA 480
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GCTAAAGCTTTTGCAGAGAGGGAGAATACCTTTTTCATGGAGACTTCTGCACTTGAAGCT 480
Query 481 GTGAATGTTGATAATGCTTTCACCGAAGTTCTCACTCAGATTTACAGAGTTGTTAGCAAG 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GTGAATGTTGATAATGCTTTCACTGAAGTTCTCACTCAGATTTACAGAGTTGTTAGCAAG 540
Query 541 AAGGCTCTTGAAGCTGGAGATGATCCAACCACCGCTTTGCCTAAAGGACAAATGATTAAT 600
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 541 AAGGCTCTTGAAGCTGGAGATGATCCAACCACTGCTTTGCCTAAAGGACAGATGATTAAT 600
Query 601 GTTGGAAGCCGAGATGATATCTCAGCCGTTAAGAAACCCGGTTGCTGCTCTGCATAG 657
|||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 601 GTTGGAGGCCGAGATGATATCTCAGCCGTTAAAAAACCTGGTTGCTGCTCTGCATAG 657
> AT2G33870.1 | Symbols: ArRABA1h | RAB GTPase homolog A1H | chr2:14337366-14338251
REVERSE LENGTH=657
Length=657
Score = 715 bits (387), Expect = 0.0
Identities = 569/656 (87%), Gaps = 16/656 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGCATATAGAGCAGAAGACGATTACGATTACCTCTTCAAGGTGGTCTTAACCGGA 60
|||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGGAACATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGA 60
Query 61 GATTCCGGCGTCGGAAAATCTAATTTGTTATCTCGTTTCACCAGAAATGA-TTTCAGCCA 119
|||||||| || |||||||| ||| || |||| || ||||||||||| || ||| |||||
Sbjct 61 GATTCCGGTGTAGGAAAATCAAATCTGCTATCCCGATTCACCAGAAACGACTTT-AGCCA 119
Query 120 CGACTCACG-TGCGACCATCGGTGTCGAATTCGCCACCCGTAGCATCCAATG-CGATGAT 177
||||||||| | ||||||||||||| ||||| ||||| |||||||||| | | ||| ||
Sbjct 120 CGACTCACGCT-CGACCATCGGTGTTGAATTTGCCACACGTAGCATCC-AGGTCGACGAC 177
Query 178 AAGATTGTTAAGGCTCAAATCTGGGATACCGCCGGCCAAGAAAGGTACCGAGCCATCACG 237
|||||||| || ||||| || ||||| || ||||||||||||||||| ||||||||||||
Sbjct 178 AAGATTGTCAAAGCTCAGATATGGGACACTGCCGGCCAAGAAAGGTATCGAGCCATCACG 237
Query 238 AGCGCTTATTACCGAGGAGCCGTTGGTGCATTGCTTGTTTATGACGTGACGCGTCACGTA 297
|||||||||||||||||||||||||||||||| || || || |||||||| || |||||
Sbjct 238 AGCGCTTATTACCGAGGAGCCGTTGGTGCATTACTAGTCTACGACGTGACACGGCACGTG 297
Query 298 ACTTTCGAGAACGTCGAGAGATGGCTAAAGGAGCTAAGGGACCACACGGACGCAAATATT 357
|| ||||||||||| || |||||||||||||||||||| ||||||||||||||||| | |
Sbjct 298 ACATTCGAGAACGTTGAAAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACT 357
Query 358 GTTATTATGCTCGTTGGTAACAAAGCTGATCTTCG--TCACCTTCGAGCCATCTCAACTG 415
|| ||||||||||| ||||||||||||||| || | |||||||||||||||||| || |
Sbjct 358 GTGATTATGCTCGTAGGTAACAAAGCTGAT-TT-GAATCACCTTCGAGCCATCTCTACGG 415
Query 416 AAGAAGCT-AAGGCTTTTGCAGAGAGAGAGAATACCTT-TTTCATGGAGACATCTGCACT 473
|||||| | || | |||||||||||||||||| || || ||| |||||||| || |||||
Sbjct 416 AAGAAG-TGAAAGATTTTGCAGAGAGAGAGAACACTTTCTTT-ATGGAGACTTCGGCACT 473
Query 474 TGAAGC-AGTGAATGTTGATAATGCTTTCACCGAAGTTCTCACTCAGATTTACAGAGTTG 532
||||| | | ||||| || || |||||||| || ||||| || ||||||||||||||||
Sbjct 474 CGAAGCTA-TAAATGTAGAAAACGCTTTCACAGAGGTTCTTACACAGATTTACAGAGTTG 532
Query 533 TTAGCAAGAAGGCTCTTGAAGCTGGAGATGATCCAACCACCGCTTTGCCTAAAGGACAAA 592
| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 533 TAAGCAAGAAGGCTCTTGATGCTGGAGATGATCCAACCACTGCCTTGCCTAAAGGACAAA 592
Query 593 TGATTAATGTTGGAAGCCGAGATGATATCTCAGCCGTTAAGAAACCCGGTTGCTGC 648
||||||| || ||||| |||||||| | |||||||| |||||| | |||||||||
Sbjct 593 TGATTAACGTCGGAAGTAGAGATGATGTTTCAGCCGTCAAGAAATCTGGTTGCTGC 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5