BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912688
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28560.2 | Symbols: SRD2 | snRNA activating complex family p... 1663 0.0
> AT1G28560.2 | Symbols: SRD2 | snRNA activating complex family
protein | chr1:10038038-10041544 REVERSE LENGTH=1877
Length=1877
Score = 1663 bits (900), Expect = 0.0
Identities = 1000/1049 (95%), Gaps = 4/1049 (0%)
Strand=Plus/Plus
Query 78 TGAAAATCCATCAGCTGGGAGGGCAAAGAGGAAGAGGACAGTAAATAATACTGAGGTaaa 137
||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 668 TGAAAATCCATTAGCTGGGAGGGCAAAAAGGAAGAGGACAGTAAAGAATACCGAGGTAAA 727
Query 138 gaagaggacagaaaagaagactgagttaaagaagaggacagaaaagaagactgaggaagC 197
|||||||||| |||||| |||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 728 GAAGAGGACACTAAAGAATACTGAGGTAATGAAGATGACAGAAAAGAAGACTGAGGAAGC 787
Query 198 TTATCTTGCCAAAGTCGAGCAGCTTGCTAAACTCAAACAAAAGCAGGAGGAGGATAAAGC 257
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TTATCTTGTGAAAGTCGAGCAGCTTGCTAAACTCAAACAAAAGCAGGAGGAGGATAAAGC 847
Query 258 AGCTGTGACACTGCACTGCTTCAGCAAGACTTGTGAGACTGGTAAAGATGTAGCTGCACC 317
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 848 AGCTGTGACACTGCACTGCTTCAGCAAGACCAGTGAGACTGGTAAAGATGTAGTTGCACC 907
Query 318 TCCAGAAGGCTTTGAGCAGATGCAATCTCTTAGGTTCATAGATAATAATTACACGCAGGT 377
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 908 TCCAGAAGGTTTTGAGCAGATGCAATCTCTTAGGTTCATAGATAATAATTACACGAAGTT 967
Query 378 GAAGCCATCGGACATCCAGGGACAAGTGGATCCGCTATTTCCTGAAGTCATTTTGTGTCT 437
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 968 GAAGCCATCTGACATCCAGGGACAAGTGGATCCGCTATTTCCTGAAGTCATTTTGTGTGT 1027
Query 438 TGAGATTTATAACAGTCGCAAGGTTAAGATCCAAGAATTTTTGGTTCTAGGACGTCAAAT 497
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1028 TGAGATTTATAACAGTCGCAAGGTTAAGACCCAAGAATTTTTGGTTCTAGGACGTCAAAT 1087
Query 498 GTTGACTGAATTGAAGGACAACATTCACTGTGCTACAGACCAGGTGATGAAAAAGGCTGG 557
||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1088 GTTGACTGAGTTGAAGGACAATATTCACTGTGCTACAGACCAGGTGATGCAAAAGGCTGG 1147
Query 558 GAAGTATGATCCCTCTGGATACTTCCTCATAGAAGATGTCTTTCACAATGATTTAAGGAA 617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 AAAGTATGATCCCTCTGGATACTTCCTCATAGAAGATGTCTTTCACAATGATTTAAGGAA 1207
Query 618 TCCCTCGGCTAAAGATTACAGCTATCCTATTTTAGATTGGCTTTGGAACTCGAAAGATGA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TCCCTCGGCTAAAGATTACAGCTATCCTATTTTAGATTGGCTTTGGAACTCGAAAGATGA 1267
Query 678 GGCTCTTAAAAAATGGGAATGCGTTTTAACCGGCGAATTACATAAAAAGCAGAAACTGGT 737
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1268 AGCTCTTAAAAAATGGGAATGTGTTTTAACCGGCGAATTACAGAAAAAGCAGAAACTGGT 1327
Query 738 TCTAGGTGAAGCGAAATCTGTGGATTTACCTCGTTACGGAACTGCAGACATGCAGAGTAC 797
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1328 TCTAGGTGAAGCGAAATCTGTGGATTTACCTCGTTACAGAACTGCAGACATGCAGAGTAC 1387
Query 798 ACGCTTCTGTGATATAAGATTCAGAGTCGGAGCTAATTATCTCTATTGTCATCAGGGAGA 857
|| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1388 ACACTTCTGTGATATAAGATTCAGAGTCGGAGCTAGTTATGTCTATTGTCATCAGGGAGA 1447
Query 858 TTGCAAGCACACGATTGTGATTCGGGACATGAGGCTGAGTCATCCAGAGGACGTTCAGAG 917
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1448 TTGCAAGCACACGATTGTGATTCGAGACATGAGGATGAGTCATCCAGAGGACGTTCAGAA 1507
Query 918 TAGAGCGGCTTACCCGATCATGTT-TCGACCGAAACGTAGGCTTCAGAAATGCGGTGTTT 976
||||| ||||||||||||||||| | | |||||||||||| ||||||||||||||||||
Sbjct 1508 CAGAGCAGCTTACCCGATCATGTTCTGG-CCGAAACGTAGGATTCAGAAATGCGGTGTTT 1566
Query 977 GCAAGATAAAGAGAGCTTCAAAGGTTGCAGTGGATGACAAGTGGGCCAA-CGAGAACACT 1035
| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1567 GTAAGATAAAGAGAGCTTCAAAGGTTGCAGTGGATGACAAGTGGGC-AAGCGAGAACAGT 1625
Query 1036 TGCTATTTCTGTGATGTTTGTTTTGAGCTTCTACACTCAGAGGAAGGCCCACTTAACCGT 1095
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1626 AGCTATTTCTGTGATGTTTGTTTTGAGCTTCTACACTCAGAGGAAGGCCCACTTAACTGT 1685
Query 1096 GACTTCCCAGTGTATGATTATGTGTATGA 1124
||||||||||||| |||||||||| ||||
Sbjct 1686 GACTTCCCAGTGTTTGATTATGTGCATGA 1714
Score = 121 bits (65), Expect = 2e-26
Identities = 73/77 (95%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1 ATGGCTATGAAGGAAGCCTTTCCGGAAGATTACCTTTCCCAAAAGGAGCTCGAACAATCT 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 558 ATGGCTATGAAGGAAGCCTTTCCGGAAGATTACCTTTCCCAAGAGGAGCTCGAACCATCT 617
Query 61 TTAGACGCTTCTCATCA 77
||| ||| |||||||||
Sbjct 618 TTAAACGTTTCTCATCA 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5