BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912699
Length=354
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28815.1 | Symbols: | unknown protein; Has 5 Blast hits to ... 405 1e-112
> AT1G28815.1 | Symbols: | unknown protein; Has 5 Blast hits to
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:10095797-10096374 FORWARD LENGTH=493
Length=493
Score = 405 bits (219), Expect = 1e-112
Identities = 315/359 (88%), Gaps = 16/359 (4%)
Strand=Plus/Plus
Query 1 ATGTCTTGCAAAGGAGATATTGTGGTTGGTGTGGAGGAAGTATTGTTTCTCTTACCTTCA 60
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 16 ATGTCTTGCAAAGGAGATATCGTGGTTGGTGTGGAGGAAGGATTGTTTCTCTTACCTTCA 75
Query 61 AATCTTTTTAATGAACTCTTTCTTGATCGCACTTGTCCATTCCCACAGAGTGATCGAGGA 120
||||||||||||||||||||||||||||| | ||||| ||||||||| |||||| |
Sbjct 76 AATCTTTTTAATGAACTCTTTCTTGATCG---T---CCATTTCCACAGAGTAATCGAGTA 129
Query 121 CGTAGCTACTATGATCGGAAGCCAAGAATGTGGTACGAGAT-GAACCACTACGGTTCCTT 179
|||||||||||||||||||||||||||||||||| | || ||||||| | |||||| |
Sbjct 130 GGTAGCTACTATGATCGGAAGCCAAGAATGTGGTATGC-ATTGAACCACAAGGGTTCCAT 188
Query 180 GGTGAGGCCAAGTGGTGAT-ACA--GGTGCAGCGCGAGTTAAGCCACGTGGCACTGGCGT 236
||||||||||| ||||||| | | |||||||| ||||||||||||||||||||||| ||
Sbjct 189 GGTGAGGCCAAATGGTGATGATAAAGGTGCAGCACGAGTTAAGCCACGTGGCACTGGAGT 248
Query 237 GTTTCTTCCCGAGAGACCAGCGAGTAGCTCAGAAGAGAAGAGACCCA-CGAAGAAGCCAT 295
||||||||| |||||||| | |||||||||| ||||||| | | || | || |||||||
Sbjct 249 GTTTCTTCCTGAGAGACCGGTGAGTAGCTCACAAGAGAA-A--CTCAAC-AACAAGCCAT 304
Query 296 GCCCCGTCACCTCCTCTCATTCTAGACAAGTCTTTCTTCCCAAGGAATGGGCTTATTAG 354
||||| ||| |||||||||||| ||| || |||||||||| ||||||||| ||||||||
Sbjct 305 GCCCCATCATCTCCTCTCATTCCAGAAAAATCTTTCTTCCTAAGGAATGGTCTTATTAG 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16588357170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5