BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912713

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29100.1 | Symbols:  | Heavy metal transport/detoxification ...   682    0.0  


> AT1G29100.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr1:10169084-10169619 FORWARD LENGTH=426
Length=426

 Score =  682 bits (369),  Expect = 0.0
 Identities = 408/427 (96%), Gaps = 2/427 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAGTGCCAATGGACTGTCCCGGGTGCGAGAACAAAGTTAAGAAAGCTCTTGAAAAG  60
            |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  1    ATGGAAGTGCCAATGGACTGTCCCGGTTGCGAGAACAAAGTTAGGAAAGCTCTTGAAAAG  60

Query  61   ATTAAGGGAGTCCACGATGTTCAGATAGAC-TCAAAGCAGCAGAAAGTAACGGTGACTGG  119
            || || |||||||||||||||||||||||| | ||| ||||||| |||||||||||||||
Sbjct  61   ATGAACGGAGTCCACGATGTTCAGATAGACAT-AAAACAGCAGAGAGTAACGGTGACTGG  119

Query  120  TTCGGCCGAGCAGAAGAAAGTTCTGAAAGTTGCTAGGAATGTTACAAAGAGAGATATATG  179
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  120  TTCGGCCGAGCAGAAGAAAGTTCTGAAAGTTGCAAGGAATGTTACAAAGAGAGATATATG  179

Query  180  CTTATGGTCGTACCCTTACAACCCCGAATCTAATGGATATAACGACAGGTACTTCAAGAA  239
            ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct  180  CTTATGGTCGTACCCTTACCACCCTGAATCTAATGGATATAACGACAGGTACTTCAAGAA  239

Query  240  GAAGTTTCGCAAAAGAATCAACATGTCGGTGAACGGTGAGAAAGTGAGTTCCTACAACTA  299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  240  GAAGTTTCGCAAAAGAATCAACATGTCGGTGAACGGTGAGAAAGTGAGTTCCTATAACTA  299

Query  300  CCACAAGCATGGCTACCACGGACACGAGCATGGATACTACCAAGAACGGCCTTATTCAGG  359
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  300  CCACAAGCATGGCTACCACGGACACGAGCATGGATACTATCAAGAACGGCCTTATTCAGG  359

Query  360  TCTTATCGATCAGAGCGCTAGTTCTATATTCAGTGAGGAAAACCCTCATTTCTGCAGCAT  419
            ||||||| ||| ||||||||| || || |||||||| |||||||||||||||||||||||
Sbjct  360  TCTTATCAATCCGAGCGCTAGCTCCATGTTCAGTGAAGAAAACCCTCATTTCTGCAGCAT  419

Query  420  CATGTGA  426
            |||||||
Sbjct  420  CATGTGA  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5