BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912730
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09755.1 | Symbols: | pre-tRNA | chr5:3030817-3030889 REVER... 71.3 9e-12
AT4G36197.1 | Symbols: | pre-tRNA | chr4:17130052-17130124 FOR... 71.3 9e-12
AT4G34695.1 | Symbols: | pre-tRNA | chr4:16556623-16556695 FOR... 71.3 9e-12
AT3G61545.1 | Symbols: | pre-tRNA | chr3:22775922-22775994 FOR... 71.3 9e-12
AT2G38030.1 | Symbols: | pre-tRNA | chr2:15916817-15916889 FOR... 71.3 9e-12
AT2G46120.1 | Symbols: | pre-tRNA | chr2:18956641-18956713 FOR... 71.3 9e-12
AT1G29210.1 | Symbols: | pre-tRNA | chr1:10207306-10207378 REV... 71.3 9e-12
AT1G30430.1 | Symbols: | pre-tRNA | chr1:10756722-10756794 FOR... 71.3 9e-12
AT1G75570.1 | Symbols: | pre-tRNA | chr1:28373489-28373561 REV... 71.3 9e-12
AT1G75650.1 | Symbols: | pre-tRNA | chr1:28407984-28408056 FOR... 71.3 9e-12
AT3G51140.1 | Symbols: | Protein of unknown function (DUF3353)... 69.4 3e-11
AT4G18725.1 | Symbols: | pre-tRNA | chr4:10302001-10302073 FOR... 65.8 4e-10
AT4G13445.1 | Symbols: | pre-tRNA | chr4:7814202-7814274 FORWA... 65.8 4e-10
AT3G51135.1 | Symbols: | pre-tRNA | chr3:18997643-18997715 REV... 65.8 4e-10
> AT5G09755.1 | Symbols: | pre-tRNA | chr5:3030817-3030889 REVERSE
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT4G36197.1 | Symbols: | pre-tRNA | chr4:17130052-17130124 FORWARD
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT4G34695.1 | Symbols: | pre-tRNA | chr4:16556623-16556695 FORWARD
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT3G61545.1 | Symbols: | pre-tRNA | chr3:22775922-22775994 FORWARD
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT2G38030.1 | Symbols: | pre-tRNA | chr2:15916817-15916889 FORWARD
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT2G46120.1 | Symbols: | pre-tRNA | chr2:18956641-18956713 FORWARD
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT1G29210.1 | Symbols: | pre-tRNA | chr1:10207306-10207378 REVERSE
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT1G30430.1 | Symbols: | pre-tRNA | chr1:10756722-10756794 FORWARD
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT1G75570.1 | Symbols: | pre-tRNA | chr1:28373489-28373561 REVERSE
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT1G75650.1 | Symbols: | pre-tRNA | chr1:28407984-28408056 FORWARD
LENGTH=73
Length=73
Score = 71.3 bits (38), Expect = 9e-12
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT3G51140.1 | Symbols: | Protein of unknown function (DUF3353)
| chr3:18997600-18999904 FORWARD LENGTH=1636
Length=1636
Score = 69.4 bits (37), Expect = 3e-11
Identities = 53/60 (88%), Gaps = 4/60 (7%)
Strand=Plus/Plus
Query 470 TTG-AAAAAGATAAGAAAAGCTCTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||| ||||| | || ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 25 TTGAAAAAACA-AAAAAAAG--CTCCGTCGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 81
> AT4G18725.1 | Symbols: | pre-tRNA | chr4:10302001-10302073 FORWARD
LENGTH=73
Length=73
Score = 65.8 bits (35), Expect = 4e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
||||||||||||||||||||||||||||||| ||||||
Sbjct 73 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTTGGGTGA 36
> AT4G13445.1 | Symbols: | pre-tRNA | chr4:7814202-7814274 FORWARD
LENGTH=73
Length=73
Score = 65.8 bits (35), Expect = 4e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
|||||| |||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTCGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
> AT3G51135.1 | Symbols: | pre-tRNA | chr3:18997643-18997715 REVERSE
LENGTH=73
Length=73
Score = 65.8 bits (35), Expect = 4e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 491 CTCCGTTGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 528
|||||| |||||||||||||||||||||||||||||||
Sbjct 73 CTCCGTCGCCGGGACTCGAACCCGGGTCTCTCGGGTGA 36
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25267775941
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5