BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912731

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29270.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   510    3e-144


> AT1G29270.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G40435.1); 
Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10230087-10231142 
FORWARD LENGTH=642
Length=642

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 340/372 (91%), Gaps = 0/372 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGATTAAGGAGGTTCTTCTATACATAGCCATGCTCAAACTCGAGATAGAAGCTTTG  60
            ||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  ATGGTTATTAGGGAAGCTCTTCTATACATAGCCATGCTCAAACTCGAGATAGAAGCTTTG  209

Query  61   CAGAGAGAATATGAAGATTTGAAAATTATCAAAAAAGAACCTTTACATCAGTTTCAGGAG  120
            |||||||||||||||||| | || |||| |||||||||| |||| || || |||||||||
Sbjct  210  CAGAGAGAATATGAAGATCTCAAGATTACCAAAAAAGAATCTTTGCACCAATTTCAGGAG  269

Query  121  GTGAAGGTAGAGAAGATTGGGGAAATGTTTCAAGTGAAAATAAAAAGTCCAAAGGGAGAA  180
            ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||
Sbjct  270  GTGAAGGTAGAGAAGATTGGGGAAATGTTTCAAGTAAAAATAAAAAGTCCACGGGGAGAA  329

Query  181  AATAATATTGTTAACATTCTTGAAGCATTTGAAGAAATGGGGTTGAGTGTGGCTCAAGCA  240
            || ||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  330  AACAATCTTGTGAATATTCTTGAAGCATTTGAAGAAATGGGGTTGAATGTGGCTCAAGCA  389

Query  241  AGGGTATCGTGCCTAGATTCATTTGCCATGGAAGCCATTGTTTCACCTCAGTCGAAAGAC  300
            |||| ||| ||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct  390  AGGGCATCATGCCTAGATTCATTTGCCATGGAAGCCATTGTTGCACCTCAATCCAAAGAC  449

Query  301  AAGCTGTGTAGTGTGGATGATTTGACTCAAACTCTTCTCAAAGCTGTTGTCAAGTCAATT  360
            ||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||| |
Sbjct  450  AAGCTTTGTAGTGTGGATGATTTGACTCAAACTCTTGTCAAAGCTCTTGTCAAGCCAAGT  509

Query  361  GCCCCAATGTAA  372
            | |||| |||||
Sbjct  510  GTCCCACTGTAA  521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5