BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912742
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29380.1 | Symbols: | Carbohydrate-binding X8 domain superf... 941 0.0
> AT1G29380.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:10284121-10285970 FORWARD LENGTH=1335
Length=1335
Score = 941 bits (509), Expect = 0.0
Identities = 635/692 (92%), Gaps = 24/692 (3%)
Strand=Plus/Plus
Query 1 ATGACTCCCCACATAGCTCCTCGATGTTTCTCCACCATCATGCTTCTATGGCTTCTATAT 60
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 89 ATGACTCACCGTATAGCTCCTCGATGTTTCTCCACCATCATGCTTCTATGTCTTCTATAT 148
Query 61 ACTTCACCTCTAGATGTTATAGCTCAAGGTCAGGGAGGACAAGGTGATATACCAGTTGTT 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 149 ACTTCACCTCTAGATGTTATAGCTCAGGGTCAGGGAGGACAAGGTGATATACCAGTTGTT 208
Query 121 AATCCTACAGCTCCCGGGGGTAGTACCACCACACCAACCATAACACAACCATCACCGCCT 180
|||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 209 AATCCTACAGCTCCAGGTGGTAGTACCACAACACCAACCATAACACAACCGTCACCGCCT 268
Query 181 TCCTTGACATTCCCAGGTCCAACTACACCAACAACTACACCAACTGGTGGTTATCCACCA 240
||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 269 TCCTTGACATTCCCAGG------T----C--CAACTACACCAACTGGTGGTTATCCACCT 316
Query 241 CTTGACGGTACCACACCAACTGGTGGTTACCCACCCCTTTATGGTACCACACCACCaggt 300
|||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||
Sbjct 317 CTTGACGGTACCACGCCAACCGGTGGTTACCCACCACTTTATGGTACTACACCGCCAGGT 376
Query 301 ggtggtgatgtaggtggtggaggaggcggttatggtggtggtgcacc---t---ggtgga 354
|| |||||||||||||||||||||||||| |||||||||||| |||| | ||||||
Sbjct 377 GGAGGTGATGTAGGTGGTGGAGGAGGCGGATATGGTGGTGGTACACCTGGTGGAGGTGGA 436
Query 355 ggtggaggtggtgacactggtgcaggtggtggaggtggcggttatggtggcggtgggggt 414
|||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||
Sbjct 437 GGTGGAGGTGGTGACACTGGTGCAGGTGCTGGAGGTGGGGGTTATGGT---GGTGGTGGT 493
Query 415 gacactggtgcaggtgga-g-g-tggtagtggtcagtggtgTATAGCAAAAGCAAATGCT 471
|||||||||||||||||| | | ||||||||| |||||||||||||| ||||||||||||
Sbjct 494 GACACTGGTGCAGGTGGAGGTGTTGGTAGTGGCCAGTGGTGTATAGCGAAAGCAAATGCT 553
Query 472 TCGCCAACATCATTACAGGTGGCTTTGGATTATGCTTGTGGGTATGGAGGAGCTGATTGT 531
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 554 TCGCCAACATCATTACAGGTGGCTTTAGATTACGCTTGTGGGTATGGAGGAGCTGATTGT 613
Query 532 GGCCAGATACAACAAGGTGCAGCCTGTTACGAGCCTAATACTATTCGTGATCATGCTTCC 591
||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct 614 GGCCAGATACAACAAGGTGCAGCATGTTACGAGCCTAACACAATTCGTGACCATGCTTCC 673
Query 592 TTTGCTTTCAATAGTTATTACCAGAAGCATCCTGGCTCAGACAGCTGCAATTTTGGAGGA 651
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 674 TTTGCTTTCAATAGTTATTACCAGAAGCATCCTGGTTCAGACAGCTGCAATTTTGGAGGG 733
Query 652 GCAGCACAACTCACCAGCACAGATCCAAGTAA 683
||||||||||| || |||||||||||||||||
Sbjct 734 GCAGCACAACTTACTAGCACAGATCCAAGTAA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5