BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912745
Length=2235
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37510.2 | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrog... 2837 0.0
AT1G29410.2 | Symbols: PAI3 | phosphoribosylanthranilate isomer... 289 1e-76
> AT5G37510.2 | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrogenase,
mitochondrial, putative | chr5:14897410-14900647 FORWARD
LENGTH=2527
Length=2527
Score = 2837 bits (1536), Expect = 0.0
Identities = 2009/2236 (90%), Gaps = 37/2236 (2%)
Strand=Plus/Plus
Query 1 ATGGGATTAAGCAGCTTAGCTTCTAGAACAATTCGACCAGTTTCTCGTCTTCTTC-ATCA 59
||||| ||| ||| |||||||||| ||||||||||||||| ||| |||||||||| |||
Sbjct 81 ATGGGTTTAGGCATCTTAGCTTCTCGAACAATTCGACCAGCTTCACGTCTTCTTCAATC- 139
Query 60 CCAGAA-CACTAGTTTCTTCCTCCGCACAATCGTCTCAAAACCAGAGCTTCAATCTCCGG 118
|| || | | | |||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 140 TCA-AACCTCCAATTTCTTCCTCCGCACAATCGTCTCAAAACCAGAGCTCCAATCTCCTG 198
Query 119 AAACCGCCGCTGTATCTCAGTCTGAGCCGACG-C-C-GATTCTTCCTCCTAGGAAA-CCT 174
|| |||| ||||| ||| || |||||||| || | | |||||| ||||||| |||| |||
Sbjct 199 AATCCGCTGCTGTCTCTGAGCCTGAGCCGCCGACACAGATTCTCCCTCCTA-GAAACCCT 257
Query 175 GTTGGTGGGGCACGTGTCCATTTCTCAAATCCTGATGAGGCGATTGAGGTGTTCGTTGAT 234
|| ||||| ||||| ||||| ||||| |||||||| || ||||| ||||| || || |||
Sbjct 258 GTAGGTGGAGCACGCGTCCACTTCTCGAATCCTGAAGATGCGATCGAGGTCTTTGTCGAT 317
Query 235 GGGTT-CGCGGTGAAAATCCC-AAAGGGTTTCACGGTTCTTCAGGCGTGTGAGGTCGCCG 292
|||| |||||| ||| |||| ||| || ||||| ||||||||||| ||||||||||| |
Sbjct 318 -GGTTACGCGGTCAAAGTCCCTAAA-GGATTCACTGTTCTTCAGGCTTGTGAGGTCGCTG 375
Query 293 GAGTTGATATTCCGAGGTTTTGTTATCATTCACGGTTGTCTATTGCTGGAAACTGTC-GG 351
|||||||||| |||||||||||||||||||| || || |||||||||||||| || | ||
Sbjct 376 GAGTTGATATCCCGAGGTTTTGTTATCATTCTCGTTTATCTATTGCTGGAAATTG-CAGG 434
Query 352 ATGTGTCTTGTTGAGGTTGAGAAGTCTCCTAAACCTGTGGCTTCGTGTGCCATGCCTGCA 411
||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 435 ATGTGTCTTGTTGAGGTTGAGAAATCTCCTAAGCCTGTAGCTTCATGTGCCATGCCTGCG 494
Query 412 CTTCCTGGGATGAAGATTAAGACTGACACACCAATAGCAAAGAAAGCGAGGGAGGGAGTG 471
|||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct 495 CTTCCTGGGATGAAGATTAAGACTGATACACCGATAGCTAAGAAGGCGAGGGAGGGAGTG 554
Query 472 ATGGAATTTCTGTTGATGAACCATCCTTTGGATTGCCCAATATGTGACCAAGGAGGAGAA 531
||||| ||| |||||||||| || ||||||||||| || || |||||||||||||||||
Sbjct 555 ATGGAGTTTTTGTTGATGAATCACCCTTTGGATTGTCCTATTTGTGACCAAGGAGGAGAG 614
Query 532 TGTGATCTTCAGGATCAGTCTATGGCTTTTGGATCTGACAGAGGCCGTTTCACTGAGATG 591
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 615 TGTGATCTTCAGGATCAGTCTATGGCTTTTGGATCTGATAGAGGACGTTTTACTGAGATG 674
Query 592 AAAAGATCTGTCGTTGATAAAAATCTCGGTCCTCTTGTGAAGACCGTTATGACTCGGTGT 651
||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 675 AAAAGATCTGTTGTTGATAAGAATCTTGGTCCTCTTGTGAAGACTGTTATGACTCGGTGT 734
Query 652 ATACAATGTACAAGGTGTGTACGATTTGCCACAGAAGTTGCTGGGGTTCAGGATCTTGGC 711
|| || ||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 735 ATCCAGTGTACAAGGTGTGTACGATTTGCTTCTGAAGTTGCTGGGGTTCAGGATCTTGGT 794
Query 712 ATTCTTGGTCGTGGTAGTGGAGAAGAAATCGGAACTTATGTCGAGAAA-CTTATGACCAG 770
|| || ||||||||||||||||| ||||| ||||||||||| || ||| |||||||||||
Sbjct 795 ATACTAGGTCGTGGTAGTGGAGAGGAAATTGGAACTTATGTTGA-AAAGCTTATGACCAG 853
Query 771 TGAACTCTCTGGAAATGTCATAGACATCTGTCCTGTGGGAG-CTCTGACGTCAAAGCCCT 829
|||||||||||||||||| || || ||||||||||| |||| || |||| |||||||| |
Sbjct 854 TGAACTCTCTGGAAATGTTATTGATATCTGTCCTGTTGGAGCCT-TGACCTCAAAGCCTT 912
Query 830 TTGCCTTCAAAGCCAGAAACTGGGAGTTGAAAGGAACAGAAACCATTGATGTTACTGATG 889
||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 913 TTGCCTTTAAAGCCAGAAACTGGGAGTTGAAAGCAACAGAAACTATTGATGTTAGTGATG 972
Query 890 CTGTTGGGTCCAACATCCGTGTTGATAGTAGAGGACCAGAGGTGATGCGTATCCTTCCAC 949
|||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 973 CTGTTGGGTCCAACATCCGTGTTGATAGTAGAGGACCAGAAGTAATGCGTATCATTCCAC 1032
Query 950 GCCTTAATGAGGATATAAATGAAGAATGGATTTCTGACAAAACTCGATTCAGCTATGATG 1009
|||| |||||||||||||| ||||||||||| ||||||||||| |||||| | ||||| |
Sbjct 1033 GCCTGAATGAGGATATAAACGAAGAATGGATATCTGACAAAACCCGATTCTGTTATGACG 1092
Query 1010 GCCTGAAAAGACAAAGGCTGAGCGACCCTATGATTCGAGATGCGGATGGACGATTCAAGG 1069
|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 1093 GCCTGAAAAGACAAAGGCTGAGCGACCCTATGATCCGAGATTCCGATGGACGATTCAAGG 1152
Query 1070 CAGTGAGCTGGCGTGATGCTTTGGCTGTTGTGGGTGATATTATTCATCAGGTGAAGCCAA 1129
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1153 CAGTGAGCTGGCGTGATGCCTTGGCTGTTGTGGGTGATATCATTCATCAGGTGAAGCCAG 1212
Query 1130 ATGAGATTGTTGGAATTGCAGGTCAACTATCTGATGCCGAATCCATGATGGTATTGAAGG 1189
|||||||||||||| | |||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1213 ATGAGATTGTTGGAGTAGCAGGTCAGCTATCTGATGCGGAATCCATGATGGTACTGAAGG 1272
Query 1190 ACTTTGTGAACAGAATGGGTTCAGACAATGTCTGGTGTGAAGGAACAGCTG-TGGGCGTT 1248
|||| || ||||||||||| ||||||||||| ||||||||||||||||||| | || |||
Sbjct 1273 ACTTCGTTAACAGAATGGGCTCAGACAATGTATGGTGTGAAGGAACAGCTGCT-GGTGTT 1331
Query 1249 GATGCTGATCTTAGATACAGTTATCTTATGAACACTAGCATC-GCTGGACTTGAGAATGC 1307
|||||||||||||||||||||||||| ||||||||||||||| | ||||||||| || ||
Sbjct 1332 GATGCTGATCTTAGATACAGTTATCTGATGAACACTAGCATCAG-TGGACTTGAAAACGC 1390
Query 1308 AGATCTCTTCCTTCTTATTGGTACCCAGCCTAGGGTTGAAGCTGCAATGGTGAACGCTAG 1367
|||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1391 CGATCTCTTCCTTCTCATCGGTACCCAGCCTAGGGTGGAAGCTGCAATGGTGAATGCTAG 1450
Query 1368 GATCTGCAAGACAGTCCGTGCATCAAATGCCAAGGTTGCATACATTGGTCCACCTTCAGA 1427
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 1451 GATCTGCAAGACAGTCCGTGCATCAAATGCCAAGGTTGGATATGTTGGTCCACCTGCAGA 1510
Query 1428 TTTCAACTACGATTGCAAACACCTCGGAACTGGTCCTGATACCCTCAAGGAAATTGCTGA 1487
||||| ||||| |||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1511 GTTCAATTACGACTGCAAACACCTCGGGACTGGGCCTGATACTCTCAAGGAAATTGCTGA 1570
Query 1488 GGGAAGTCACCCATTCTGCT-CAGCTCTCAAGAACGCCAAAAACCCTGCAATCATTGTTG 1546
|||| | || |||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 1571 GGGACGGCATCCATTCTG-TACGGCTCTCAAGAACGCCAAAAACCCTGCAATCATTGTTG 1629
Query 1547 GTGCTGGGCTCTTTAACAGAACCGATAAAGATGCAATCCTCTGTGCTGTTGAATCCATTG 1606
||||||||||||| |||||||| |||||| |||| ||||||| | |||| || |||||||
Sbjct 1630 GTGCTGGGCTCTTCAACAGAACTGATAAAAATGCTATCCTCTCTTCTGTGGAGTCCATTG 1689
Query 1607 CACAAGTCAACAATGTTATCCGACCAGACTGGAATGGTCTCAACTTTCTCCTTCTGTATG 1666
|||||| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1690 CACAAGCCAACAATGTTGTCCGACCAGACTGGAACGGTCTCAACTTTCTCCTTCAGTATG 1749
Query 1667 CTGCACAAGCGGCTGCTCTTGATCTTGGCCTCATTCAACAGTCTC-CCAAAGCCCTCGAG 1725
|||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 1750 CTGCCCAAGCGGCTGCTCTTGATCTTGGTCTCATTCAACAGTC-CGCCAAAGCCCTCGAG 1808
Query 1726 TATGCAAAATTCGTCTACTTGATGGGATCAGACGATGTAGATGTTGACAAGATCCCAAAA 1785
| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| || |||
Sbjct 1809 TCTGCAAAATTCGTCTACTTGATGGGAGCAGACGATGTAAATGTTGACAAGATTCCTAAA 1868
Query 1786 GACGCGTTTGTTGTCTACCAAGGACACCATGGAGACAAAGCGGTTTATCGTGCAAACGTG 1845
||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1869 GACGCCTTTGTGGTTTACCAAGGACACCATGGAGACAAAGCGGTTTACCGTGCAAACGTA 1928
Query 1846 ATTCTCCCTGCGA-CAGCCTTCACCGAGAAAGAAGGAACTTATGAAAACACCGAAGGATA 1904
||||||||||| | | |||||||| |||||||||||||| |||||||| || |||||||
Sbjct 1929 ATTCTCCCTGC-ATCGGCCTTCACTGAGAAAGAAGGAACCTATGAAAATACTGAAGGATT 1987
Query 1905 TACCCAACAGACGGTTCCTGCTGTTCCAACAGTTGGCGATGCAAGAGACGACTGGAAGAT 1964
|||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1988 TACCCAACAGACTGTTCCAGCTGTTCCAACAGTTGGTGATGCAAGAGATGACTGGAAGAT 2047
Query 1965 TGTAAGAGCTTTATCCGAGGTCTCGGGTGTGAAGCTTCCATACAACTCAATCGAAGGTGT 2024
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 TGTGAGAGCCTTATCCGAGGTCTCGGGTGTGAAGCTTCCATACAACTCAATCGAAGGTGT 2107
Query 2025 CAGAACAAGAATCAAGA-CGGTTGCACCAAACCTAGTCCACACAGACGAGCGAGAGGCAG 2083
||| ||||||| |||| || |||||||||| |||||||||||||| ||||||||| |||
Sbjct 2108 TAGATCAAGAATAAAGAGCG-TTGCACCAAATCTAGTCCACACAGATGAGCGAGAGCCAG 2166
Query 2084 CTGCTTTTGGCCCTACCTTGAAGCCTGAGT-CAAAGGAGACAAT-AGACACAATGCCTTT 2141
|||||||||| ||| | ||||||||||||| ||| |||| |||| || ||||| || ||
Sbjct 2167 CTGCTTTTGGGCCTTCATTGAAGCCTGAGTGCAA-GGAGGCAATGAG-CACAACACCGTT 2224
Query 2142 C-AAACCCGTGGTCGAAAATTTTTATATGACAAACTCAATCACAAGAGCCTCAAAGATCA 2200
| ||||| ||||| || || ||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 2225 CCAAACC-GTGGTTGAGAACTTTTACATGACAAACTCGATCACAAGAGCATCAAAGATCA 2283
Query 2201 TGGCTCAGTGCAGTGC 2216
|||| |||||||||||
Sbjct 2284 TGGCGCAGTGCAGTGC 2299
> AT1G29410.2 | Symbols: PAI3 | phosphoribosylanthranilate isomerase
3 | chr1:10297877-10300005 REVERSE LENGTH=1638
Length=1638
Score = 289 bits (156), Expect = 1e-76
Identities = 176/186 (95%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 2050 CCAAACCTAGTCCACACAGACGAGCGAGAGGCAGCTGCTTTTGGCCCTACCTTGAAGCCT 2109
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1186 CCAAACCTAGTCCACACAGACGAGCGAGAGGCAGCTGCTTTTGGCCCTTCCTTGAAGCCA 1245
Query 2110 GAGTCAAAGGAGACAATAGACACAATGCCTTTCAAACCCGTGGTCGAAAATTTTTATATG 2169
||||| || |||||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 1246 GAGTCCAATGAGACAATAGACACAACACCTTTCAAACCCGTGGTTGAGAATTTTTACATG 1305
Query 2170 ACAAACTCAATCACAAGAGCCTCAAAGATCATGGCTCAGTGCAGTGCTTTGCTTCTCAAG 2229
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1306 ACAAACTCAATCACAAGAGCCTCAAAGATCATGGCTCAGTGCAGTGCTTTGCTCCTCAAG 1365
Query 2230 AAGTGA 2235
||||||
Sbjct 1366 AAGTGA 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110893003905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5