BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912754
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein fa... 398 4e-110
AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive prot... 398 4e-110
AT1G29450.1 | Symbols: | SAUR-like auxin-responsive protein fa... 361 5e-99
AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein fa... 350 1e-95
AT1G29430.1 | Symbols: | SAUR-like auxin-responsive protein fa... 333 1e-90
AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein fa... 331 4e-90
AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein fa... 294 5e-79
> AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10301152-10301951 REVERSE LENGTH=800
Length=800
Score = 398 bits (215), Expect = 4e-110
Identities = 329/383 (86%), Gaps = 11/383 (3%)
Strand=Plus/Plus
Query 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTCAGCATGGAAAAGAATCTCACTTCA 236
||||||||||||||||||||||| ||||| ||||| || | ||||||||||||| ||||
Sbjct 68 AAGATGGCCAAGAAATGGCAACAGAGAGCTGCCTTAAG-AAGGAAAAGAATCTCTTTTCA 126
Query 237 GACG-TCAAGTGCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGTTT 295
| | |||| || ||||||||||||||||||| ||| ||||||| | ||||| |||||||
Sbjct 127 TA-GATCAACTGATACTACTAGCAGCTCAACCGCTGCAGAGAAGGGCTGTTTTGTGGTTT 185
Query 296 ACACGGCAGATA-AAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTTTT 353
|||| | |||| || | || |||| |||| |||| ||| || ||||||||||||||| |
Sbjct 186 ACACATCCGATAGAATC-CGCTTTGCTTTT-CCAATAAGTTATCTGAGCAACTCTGTTAT 243
Query 354 CCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCCAGC-GATGGAGCAATCA 412
||||||| ||||||||||||| ||||||||||||||| || ||| | || ||| ||||||
Sbjct 244 CCAAGAGCTCTTGAAGATATCCGAAGAAGAGTTTGGCATCCCCA-CGGAAGGACCAATCA 302
Query 413 CATTGACATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAATGG 472
||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 303 CATTGCCATTCGATTCGGTTTTCTTGGAGTATCTCATCAGATTGGTCCAAAGACGAATGG 362
Query 473 AGGGAGATACAGAAAAGGCTCTGT-TAATGTCAATCTCTAGTGCTAGATGTTCTAAACCA 531
| ||||| |||||||||||||| | ||| ||||||||||||| ||||||||||| ||||
Sbjct 363 ATGGAGACACAGAAAAGGCTCT-TATAACGTCAATCTCTAGTACTAGATGTTCTTTACCA 421
Query 532 TATTCTTTTCAACAACAAGAACA 554
| |||||||||| ||||||||
Sbjct 422 TGCTCTTTTCAACTTCAAGAACA 444
> AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive protein
family | chr1:10322574-10323189 FORWARD LENGTH=616
Length=616
Score = 398 bits (215), Expect = 4e-110
Identities = 331/385 (86%), Gaps = 15/385 (4%)
Strand=Plus/Plus
Query 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAG-CCTTCAGCATGGAAAAGAATCTCACTTC 235
|||||||| |||||||||||||||||||||| ||| || || |||||||||||||| |||
Sbjct 137 AAGATGGCTAAGAAATGGCAACAAAGAGCAGCCCTCCA-CA-GGAAAAGAATCTCATTTC 194
Query 236 AGACG-TCAAGTG-CTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGT 293
||| | |||| || || |||||||||||| | |||||||| ||| |||||||||||||
Sbjct 195 AGA-GATCAAATGTCT-TTACTAGCAGCTCTTCTACTGTAGAAAAGGGTTGTTTCGTGGT 252
Query 294 TTACACGGCAGAT-AAAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTT 351
|||||||| ||| ||| | || |||| |||| |||| ||| || |||||||||||| ||
Sbjct 253 CTACACGGCGGATAAAATC-CGCTTTGCTTTT-CCAATAAGTTATCTGAGCAACTCTATT 310
Query 352 TTCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCCAGC-GATGGAGCAAT 410
|||||||| ||||||| ||||||||||||||||| || ||| ||| | || ||| ||||
Sbjct 311 GTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCGGTCTC-CCAACGGAAGGACCAAT 369
Query 411 CACATTGACATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAAT 470
||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 370 CACATTGCCGTTCGATTCGGTTTTCTTGGAGTATCTCATCAAACTGATCCAAAGACGAAT 429
Query 471 GGAGGGAGATACAGAAAAGGCTCTGTTAATGTCAATCTCTAGTGCTA-GATGTTCTAAAC 529
||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||
Sbjct 430 GGATGGAGATACAGAAAAGGCTCTGTTGATGTCAATCTCTAGTGCTAAG-TGTTCTTTAC 488
Query 530 CATATTCTTTTCAACAACAAGAACA 554
|| |||||| | ||| ||||||||
Sbjct 489 AATGTTCTTTGCTACAGCAAGAACA 513
> AT1G29450.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10305951-10306499 REVERSE LENGTH=549
Length=549
Score = 361 bits (195), Expect = 5e-99
Identities = 325/385 (84%), Gaps = 20/385 (5%)
Strand=Plus/Plus
Query 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAG-CCTTCAGCATGGAAAAGAATCTCACTTC 235
|||||||||||||| |||||||||||||||| ||| || || ||||||| |||||| |||
Sbjct 118 AAGATGGCCAAGAAGTGGCAACAAAGAGCAGCCCTCCA-CA-GGAAAAGGATCTCATTTC 175
Query 236 AGACG-TCAAGT-GCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGT 293
| | | |||||| | | ||||| ||||||||| ||| ||||||| ||||||| |||||
Sbjct 176 A-AAGATCAAGTAG-TGCTACT---AGCTCAACCGCTGCAGAGAAGGGTTGTTTTGTGGT 230
Query 294 TTACACGGCAGATA-AAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTT 351
||||||| |||| | | |||| |||| |||| || ||| |||||||| |||||||||
Sbjct 231 TTACACGACAGACAGCA-CACGCTTTGCTTTT-CCGCTAAGTTACCTGAGTAACTCTGTT 288
Query 352 TTCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCCAGC-GATGGAGCAAT 410
|||||||| |||||||||| ||||||||||||||||||||| ||| | | |||| | ||
Sbjct 289 TTCCAAGAACTCTTGAAGATCTCTGAAGAAGAGTTTGGCCTC-CCAACTGGTGGACCTAT 347
Query 411 CACATTGACATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAAT 470
||||| | |||||||||| ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 348 CACATCGCCATTCGATTCAGTTTTCTTGGAGTATCTCATCAAATTGGTCCAAAGACGAAT 407
Query 471 GGAGGGAGATACAGAAAAGGCTCTGTTAATGTCAATCTCTAGTGCTAGATGTTCTAAACC 530
||| | ||| |||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 408 GGATGCAGACACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCTTC-CC 466
Query 531 ATATTCT-TTTCAA-CAACAAGAAC 553
| || || ||| || | ||||||||
Sbjct 467 A-ATGCTCTTTGAAACTACAAGAAC 490
> AT1G29490.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10319744-10320402 FORWARD LENGTH=659
Length=659
Score = 350 bits (189), Expect = 1e-95
Identities = 307/361 (85%), Gaps = 20/361 (6%)
Strand=Plus/Plus
Query 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTCAGCATGGAAAAGAATCTCACTT-C 235
||||||||||||||||||||||| ||||||||||| || | |||||||||||||| || |
Sbjct 116 AAGATGGCCAAGAAATGGCAACAGAGAGCAGCCTTAAGGA-GGAAAAGAATCTCA-TTCC 173
Query 236 AGACG-TCAAGTGCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGTT 294
||| | |||| | |||||||||| |||||| || | ||||||||| | ||||| ||||||
Sbjct 174 AGA-GATCAAATTCTACTACTAGTAGCTCATCCGCGGTAGAGAAGGGCTGTTTTGTGGTT 232
Query 295 TACACGGCAGATAAAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTT-T 352
||||| || ||| ||| ||| |||| |||| || | ||| |||||||| ||||||||| |
Sbjct 233 TACACTGCGGATCAAGTACGCTTTGCTTTT-CCGATAAGTTACCTGAGTAACTCTGTTAT 291
Query 353 TCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGG-CCTCTCCAGC-GATGGAGCAAT 410
| |||||| |||||||||||||||||||||||||||| || ||| | || ||| ||||
Sbjct 292 T-CAAGAGCTCTTGAAGATATCTGAAGAAGAGTTTGGTATTC-CCA-CAGAAGGACCAAT 348
Query 411 CACATTG--A--C-ATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGA 465
||| ||| | | |||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 349 CACGTTGCCATTCGATTCGATTCGATTTTCTTGGAGTATCTCATCAAATTGATCAAAAGA 408
Query 466 CGAATGGAGGGAGATACAGAAAAGGCTCTGT-TAATGTCAATCTCTAGTGCTAGATGTTC 524
|||||||| |||||||||||||| ||||| | ||| | ||||||||||||||||||||||
Sbjct 409 CGAATGGATGGAGATACAGAAAACGCTCT-TATAACGGCAATCTCTAGTGCTAGATGTTC 467
Query 525 T 525
|
Sbjct 468 T 468
> AT1G29430.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10302650-10303335 REVERSE LENGTH=686
Length=686
Score = 333 bits (180), Expect = 1e-90
Identities = 299/353 (85%), Gaps = 21/353 (6%)
Strand=Plus/Plus
Query 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTC-AGCATGGAAAAGAATCTCACTTC 235
||| ||||||||||||||||||||||||||||| || || | | |||||||| ||| |||
Sbjct 137 AAGTTGGCCAAGAAATGGCAACAAAGAGCAGCCCTCAAG-A-GAAAAAGAATTTCATTTC 194
Query 236 AGACG-TCAAGTGCTACTACTAGCAGCTCAACCA-CTGTAGAGAAGCGTTGTTTCGTGGT 293
||| | |||||| ||||||||||||| ||| || ||||||| ||| |||||||||||||
Sbjct 195 AGA-GATCAAGTATTACTACTAGCAGC-CAAACAGCTGTAGAAAAGGGTTGTTTCGTGGT 252
Query 294 TTACACGGCAGATAA-AGCACGTTTTGT--TTTCCCAAAAAGCTACCTGAGCAACTCTGT 350
||||||||| ||||| | | |||||| | |||||| || | ||||| |||||| || |
Sbjct 253 TTACACGGCTGATAAGATC-CGTTTT-TCATTTCCCTTAA-GTTACCTAAGCAACACTAT 309
Query 351 TTTCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCC-AGCG-ATGGAGCA 408
| |||||||| ||||||| ||||||||||||||||| || ||| || | || | ||| ||
Sbjct 310 TGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTTCGGTCTC-CCGA-CGGAAGGACCA 367
Query 409 ATCACATTGACATTCGATTCGGT-TTTCTTGGAGTATCTCATCAAAT-TGATCCAACGAC 466
||||||||| |||||||||||| ||| || |||||||||||||| | |||||||| |||
Sbjct 368 ATCACATTGCCATTCGATTCGGCCTTT-TTAGAGTATCTCATCAA-TCTGATCCAAAGAC 425
Query 467 GAATGGAGGGAGATACAGAAAAGGCTCTGTTAATGTCAATCTCTAGTGCTAGA 519
||||||| | |||||||||||||||||||||| |||||||||| |||||||||
Sbjct 426 GAATGGATGAAGATACAGAAAAGGCTCTGTTATTGTCAATCTCAAGTGCTAGA 478
> AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10321210-10321864 FORWARD LENGTH=655
Length=655
Score = 331 bits (179), Expect = 4e-90
Identities = 304/359 (85%), Gaps = 30/359 (8%)
Strand=Plus/Plus
Query 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGC-CTTCAGCATGGAAAAGAATCTCACTT- 234
|||||| || |||||||||||| |||||||| || || || |||||||||||||| ||
Sbjct 105 AAGATGTTCAGGAAATGGCAACAGAGAGCAGCTCTCCA-CA-GGAAAAGAATCTCA-TTC 161
Query 235 C--AGACGTCAAGTGCTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTG-TTTCGTG 291
| |||| ||| | ||| | | |||||||||||||||||||| | || ||| ||
Sbjct 162 CAAAGAC--CAA--G-TAC--C---C-GCTCAACCACTGTAGAGAAGGGATGCTTT-GTC 209
Query 292 GTTTACACGGCAGATAA-AGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTG 349
||||||||||| || || | |||| |||| |||| || | ||||||||| ||||||||||
Sbjct 210 GTTTACACGGCGGACAACA-CACGCTTTGCTTTT-CCGATAAGCTACCTAAGCAACTCTG 267
Query 350 T-TTTCCAAGAGGTCTTGAAGATATCTGAAGAAGAGTTTGGCCTCTCC-AGCGATGGAGC 407
| ||| |||||| | ||| |||||||||||||||||||||||||| || | || |||| |
Sbjct 268 TATTT-CAAGAGATTTTGGAGATATCTGAAGAAGAGTTTGGCCTC-CCAACCGGTGGACC 325
Query 408 AATCACATTGA-CATTCGATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGAC 466
||||||||| | |||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 326 AATCACATT-ACCATTCGATTCGGTTTTTTTGGAGTATCTCATCAAATTGATCAAAAGAC 384
Query 467 GAATGGAGGGAGATACAGAAAAGGCTCTGTTAATGTCAATCTCTAGTGCTAGATGTTCT 525
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 385 GAATGGATGGAGATACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCT 443
> AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10307507-10308143 REVERSE LENGTH=637
Length=637
Score = 294 bits (159), Expect = 5e-79
Identities = 242/282 (86%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 248 CTACTACTAGCAGCTCAACCACTGTAGAGAAGCGTTGTTTCGTGGTTTACACGGCAGAT- 306
||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||
Sbjct 204 CTACTACTAGCAGCTCAACTGCTGTGGAGAAGGGCTGTTTCGTGGTTTACACGGTTGATA 263
Query 307 AAAGCACGTTTTG-TTTTCCCAAAAAGCTACCTGAGCAACTCTGTTTTCCAAGAGGTCTT 365
||| | || |||| |||| || ||| ||| ||| ||||||||||||| ||||| ||||
Sbjct 264 AAATC-CGCTTTGCTTTT-CCGTTAAGTTACTTGAACAACTCTGTTTTCGAAGAGCTCTT 321
Query 366 GAAGATATCTGAAGAAGAGTTTGGCCTCTCCAGC-GATGGAGCAATCACATTGACATTCG 424
||||||||||||||||||||| |||||| || | |||| ||||||| ||| | ||||
Sbjct 322 GAAGATATCTGAAGAAGAGTTCGGCCTC-AGGGCGGGTGGACCAATCACGTTGCCGTTCG 380
Query 425 ATTCGGTTTTCTTGGAGTATCTCATCAAATTGATCCAACGACGAATGGAGGGAGATACAG 484
| ||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||
Sbjct 381 ACTCGGTTTTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACAG 440
Query 485 AAAAGGCTCTGTTAATGTCAATCTCTAGTGCTAGATGTTCTA 526
|||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 441 AAAAAGCTCTTTTAATGTCAATCTCTAGTGCTAGATGCTCTA 482
Score = 73.1 bits (39), Expect = 3e-12
Identities = 51/56 (91%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 177 AAGATGGCCAAGAAATGGCAACAAAGAGCAGCCTTCA-GCATGGAAAAGAATCTCA 231
||||||||||||||||||||||||||||| ||| ||| | | ||||||||||||||
Sbjct 113 AAGATGGCCAAGAAATGGCAACAAAGAGCTGCCCTCAAG-A-GGAAAAGAATCTCA 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5