BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912760
Length=489
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29540.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 579 1e-164
AT2G34330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 230 1e-59
> AT1G29540.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G34330.1);
Has 10 Blast hits to 10 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10327371-10328105
FORWARD LENGTH=735
Length=735
Score = 579 bits (313), Expect = 1e-164
Identities = 358/380 (94%), Gaps = 2/380 (1%)
Strand=Plus/Plus
Query 111 TAATCAGACGATTATGCGGCGTTGTAAAAATCTCCTGATAAGAATCACCAGGAGCTGTCC 170
|||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 98 TAATCAGAAGATTATGCGGCGTTGTAAGAACCTCCTGATCAGAATCACCAGGAGCTGTCC 157
Query 171 CAGACGA-CATTACCGGCATTTGAAACTTCAGAAAGCGTCTTCTTCCTCTTCATCATCAT 229
||||| | |||||||||||||||||||||| |||||| |||||||| || ||||||||||
Sbjct 158 CAGAC-ACCATTACCGGCATTTGAAACTTCGGAAAGCTTCTTCTTCATCATCATCATCAT 216
Query 230 CATCTGGGAAGCAAGGCACCAAAGTGTTGGCTTCGTTCTTCCTCTCCTTCCAAAAGAAGA 289
|||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 217 CATCTGGGAAGCAAGGGACCAAAGTGTTGGCTTCATTCTTCCTCTTCTTCCAAAAGAAGA 276
Query 290 AGCAAAAGAAGGAGAAGATGAAGCGGCTTAACGAACTCAGGAGTTTCTCGGATGCCGTCA 349
| || || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 277 AACAGAACAAGGAGAAGATGAAGCGGCTTAACGAACTCAGGAGTTTCTCGGGTGCCGTCG 336
Query 350 GTGAAAGGAAGGCGTCAAATCCTGAATCAAGAAAGAAGGTATTCCCATCTTCTTGGCTTT 409
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 337 GTGAAAGGAAGGCGTCAAATCCTGAATCAAGAAAGAAGGTATTCCCATCGTCTTGGCTTT 396
Query 410 GTCAAGGTAAGGCTCATTCACAAGAAGTCTCACAAGGTCATGATCCACCTAGAGACAGCA 469
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 GCCCAGGTAAGGCTCATTCACAAGAAGTCTCACAAGGTCATGATCCACCTAGAGACAGCA 456
Query 470 CCAGCGCATTCCTTCCATGA 489
| ||||||||||||||||||
Sbjct 457 CAAGCGCATTCCTTCCATGA 476
> AT2G34330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G29540.1);
Has 10 Blast hits to 10 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14486539-14487401
FORWARD LENGTH=863
Length=863
Score = 230 bits (124), Expect = 1e-59
Identities = 224/270 (83%), Gaps = 16/270 (6%)
Strand=Plus/Plus
Query 138 AAATCTCCTGATAAGAATCACCAGGAGCTGTCCCAGACGACATTACCGGCATTTGAAACT 197
||| |||||||| |||||||||| |||||||||| |||| ||| |||||||||| ||||
Sbjct 146 AAA-CTCCTGATCAGAATCACCAAGAGCTGTCCCCGACGCCATAACCGGCATTTAAAAC- 203
Query 198 TC-AGAAAGCGTCTTCTTCCTCTTCATCATCAT-CATCTGGGAAGCAAGG-CACCAAAGT 254
|| ||||||| |||||||| ||||| | | | | | || ||||| ||||| |||||||||
Sbjct 204 TCAAGAAAGCCTCTTCTTCTTCTTC-T-A-C-TGCTTCAGGGAA-CAAGGTCACCAAAGT 258
Query 255 GTTGGCTTCGTTCTTCCTCTCCTTCCAAAAGAAGAAGCAAAAGAAGGAGAAGATGAAGCG 314
| |||||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct 259 GGTGGCTTTATTCTTCCTCTCCTTCCATAAGAAGAAGCAGAAGAAAGAAAAGATGAAGCG 318
Query 315 GCTTAACGAACTCAGGAGTTTCTCGGATGCCGTCAGTGA--A-A-G--GAAGGCGTCAAA 368
|||||||||||||||||| |||||| | || |||| ||| | | | |||||| ||||
Sbjct 319 GCTTAACGAACTCAGGAGCTTCTCGCACGCAGTCAATGACCAGAAGAAGAAGGCACCAAA 378
Query 369 TCCTGAATCAAGAAAGAAGGTATTCCCATC 398
| |||||||| ||||| || ||||||||
Sbjct 379 GCAAGAATCAAGCAAGAAAGTTTTCCCATC 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23308644208
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5