BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912766

Length=366
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29600.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fam...   388    1e-107


> AT1G29600.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family 
protein | chr1:10344046-10346243 FORWARD LENGTH=1170
Length=1170

 Score =  388 bits (210),  Expect = 1e-107
 Identities = 268/294 (91%), Gaps = 11/294 (4%)
 Strand=Plus/Plus

Query  17    AAACCGAGACAAAGGAACATGGAGAGGCAGAGGAGAGAAGCTCAAGAGAATCTGCAA---  73
             |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   
Sbjct  806   AAACCGAGACAAAGGAACATCGAGAGGCAGAGGAGAGAAGCTCAAGAGAATCTGCAACTG  865

Query  74    CAACA-G--TGGTTTCAGGTAAAGAAACTGAACCGAGACCTACTTATGTTTATTTGCTGA  130
             ||||| |   ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  866   CAACAGGAAAGGTTTCAGGTAAAGAAAATGAACTGAGACCTACTTATGTTTATTTGCTGA  925

Query  131   TGATGCCAGAGAATCACAACGTAGATGGTCAACAGAATCTGCAGGAACAAAGAAAGAGAA  190
             ||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct  926   TGATGCCAGAGAATCACAACGTAGATGTTCAACAGACTCTGCAGGAACAGAGAAAGAGAA  985

Query  191   ACATTGAGAAGGCGAGAATCGAAGCTCGTTTGAAACTTGATCAGATGCGACGCA-CTGTT  249
             ||||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct  986   ACATTAAGAAGGCGAGAATCGAAGCTCGTTTGAAACTTGATCAGATCCGAC-CAACTGTT  1044

Query  250   GTATTTGACGAATATGATCGAGCCAGTAAAATGATGAGAGAATTGGGATTTACT  303
             ||||| ||  |||| | ||||||||  |||||||||| ||||| ||||||||||
Sbjct  1045  GTATTAGAA-AATA-G-TCGAGCCACAAAAATGATGATAGAATGGGGATTTACT  1095



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17191570158


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5