BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912776
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29715.1 | Symbols: | pseudogene, putative receptor-related... 510 2e-144
AT1G29720.1 | Symbols: | Leucine-rich repeat transmembrane pro... 366 6e-101
> AT1G29715.1 | Symbols: | pseudogene, putative receptor-related
serine/threonine kinase, blastp match of 67% identity and
2.6e-98 P-value to GP|8671882|gb|AAF78445.1|AC018748_24|AC018748
Contains a weak similarity to disease resistance protein
(cf-5) gene from Lycopersicon esculentum gb|AF053993 and
contains multiple leucine rich PF|00560 repeats and protein
kinase PF|00069 domain. EST gb|T0-TRUNCATED- | chr1:10389294-10392668
REVERSE LENGTH=2313
Length=2313
Score = 510 bits (276), Expect = 2e-144
Identities = 300/312 (96%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1 ATGATCAAAGTTTCTCTCCTTTGCACAAACTCATCTCCTTCTTTAAGACCAACAATGTCA 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1883 ATGATCAAAGTTGCTCTCCTTTGCACAAACTCATCTCCTTCTTTAAGACCAATAATGTCA 1942
Query 61 GAGGCCGTGCAAATGCTTGAGGGAGAGATCGAGGTAACACAGGTTTTTTCTGATCCTGAT 120
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 1943 GAGGCCGTGCAAATGCTTGAGGGAGAGATCGAAGTAACACAGGATTTTTCTGATCCTGCT 2002
Query 121 TTATATGGACACAACTGGAGCATCTCAAAGCGGAGGGACATTGAAACACATGGTATCTCA 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2003 ATATATGGACACAACTGGAGCATCTTAAAGCGGAGGGACATTGAAACACATGGAATCTCA 2062
Query 181 AGCACGTCTGATGTGACTGATCAAACAACAACGACAATGCGATCCTCCTTTTCGGGTTAT 240
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2063 AGCACGTCTGATGTGACCGATCAAACAACAACGACAATGCGATCCTCCTTCTCGGGTTAT 2122
Query 241 GATCTCTACCCGTTATACCCTGAATCCATGATCTTAAACTCCACAGTAGAGTTTTCTTCC 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2123 GATCTCTACCCGTTATACCCTGAATCCATGATCCTAAACTCCACAGTAGAGTTTTCTTCC 2182
Query 301 TCGTCATTGTAA 312
|||||| |||||
Sbjct 2183 TCGTCACTGTAA 2194
> AT1G29720.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:10393797-10399873 REVERSE LENGTH=3259
Length=3259
Score = 366 bits (198), Expect = 6e-101
Identities = 276/314 (88%), Gaps = 4/314 (1%)
Strand=Plus/Plus
Query 1 ATGATCAAAGTTTCTCTCCTTTGCACAAACTCATCTCCTTCTTTAAGACCAACAATGTCA 60
|||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2851 ATGATCAAAGTTGCTCTCGTTTGCACAAACTCATCTCCTTCCTTAAGGCCAACAATGTCA 2910
Query 61 GAGGCCGTGCAA-ATGCTTGAGGGAGAGATCGAGGTAACACAGGTTTTTTCTGATCCTGA 119
||||| ||| || ||||| |||||||||||||| ||||||||||| | || |||||||
Sbjct 2911 GAGGCTGTG-AAGATGCTAGAGGGAGAGATCGAAATAACACAGGTTATGTCAGATCCTGG 2969
Query 120 TTTATATGGACACAACTGGAGCATCTCAAAGCGGAGGGACATTGAAACACATGGTATCTC 179
| ||||||| ||| |||||||||||||||||| |||||||||||| || ||| ||| |||
Sbjct 2970 TATATATGGGCACGACTGGAGCATCTCAAAGCTGAGGGACATTGATACGCATAGTAGCTC 3029
Query 180 AAGCACGTCTGATGTGACTGATCAAACAACAACGACAATGCGATCCTCCT-TTTCGGGTT 238
|||||||||| |||||| ||||| || ||||| |||||| ||||| || |||| ||||
Sbjct 3030 GAGCACGTCTGGTGTGACCGATCAGACGACAACAACAATGAAATCCT-CTGTTTCTGGTT 3088
Query 239 ATGATCTCTACCCGTTATACCCTGAATCCATGATCTTAAACTCCACAGTAGAGTTTTCTT 298
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3089 GTGATCTCTATCCGTTATACCCTGAATCCATGATCTTAAACTCCACAGTAGAGAATTCTT 3148
Query 299 CCTCGTCATTGTAA 312
|||||||| |||||
Sbjct 3149 CCTCGTCACTGTAA 3162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14477111712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5