BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912777
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29715.1 | Symbols: | pseudogene, putative receptor-related... 917 0.0
AT1G29720.1 | Symbols: | Leucine-rich repeat transmembrane pro... 566 3e-160
> AT1G29715.1 | Symbols: | pseudogene, putative receptor-related
serine/threonine kinase, blastp match of 67% identity and
2.6e-98 P-value to GP|8671882|gb|AAF78445.1|AC018748_24|AC018748
Contains a weak similarity to disease resistance protein
(cf-5) gene from Lycopersicon esculentum gb|AF053993 and
contains multiple leucine rich PF|00560 repeats and protein
kinase PF|00069 domain. EST gb|T0-TRUNCATED- | chr1:10389294-10392668
REVERSE LENGTH=2313
Length=2313
Score = 917 bits (496), Expect = 0.0
Identities = 585/628 (93%), Gaps = 5/628 (1%)
Strand=Plus/Plus
Query 592 AGTGGGCTTCTTCCATGCGCTGGTTCAATAA-ACTGCACTCG---TCATCGATTTCTACA 647
|||||||||||||||||||||||| |||||| | |||||| | ||| |||||||||||
Sbjct 330 AGTGGGCTTCTTCCATGCGCTGGTCCAATAAGA-TGCACTAGTTATCAGCGATTTCTACA 388
Query 648 TATAAATTGTGGTGGAGACAAGATAGTTATCACAAACTCTTCTTATGAAACCACTTATCA 707
|||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 389 TATAAATTGTGGTGGATACAACATAGTTATCACAAACTCTTCTTATAAAACTACTTATCA 448
Query 708 ACCTGATAACTACAAATTCAACGCGGCAACAAATCAGCGTTTTGGAAACTGGGGAATCAG 767
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 449 ACCTGATAACTACAAATTCAACGCGGCAACAAATCAGCGTTACGGAAACTGGGGAATCAG 508
Query 768 TAACACTGGTGCATTCACGGATTATCTTAGTGAGAAGGAGCAGCTCATCTTTTCAACTAG 827
||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 509 TAACACTGGTGTATTCACGGATTATCTTAGTGAGGAGGAGCAGTTCATCTTTTCAACTAG 568
Query 828 TTTACCACTATCTGGAAATGCTCCTGATATTTATAAGACTGCGCGTCGATCTGCTCTCTC 887
|||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TTTAACTCTACCTGTAAATGCTCCTGATATTTATAAGACTGCGCGTCGATCTGCTCTCTC 628
Query 888 TTTAGCTTATTATGCATTTTGCTTGCAAAATGGAGCTTACAATGTGAAACTACATTTTAT 947
||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||
Sbjct 629 TTTAGCTTATTATGCGTTTTGCTTGGAAAATGGACCTTACAATGTGAAACTCCATTTCAT 688
Query 948 GGGGATTCAGTTTTCTGATCAAGAACTATATAGCCGTCTTGGAAAACGCATATTTGATGT 1007
|| ||||||||||||||| ||||||||||| |||||||| || | |||||||||||||||
Sbjct 689 GGAGATTCAGTTTTCTGACCAAGAACTATACAGCCGTCTCGGCAGACGCATATTTGATGT 748
Query 1008 CTATGTTCAGGGAGAATTGTTCTTGAGAGATTTTAACATCAAAGAATTGGCTAATGGGAC 1067
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 749 CTATGTTCAGGGAGAATTGTTCTTGAGAGATTTTAACATCAAAGAAGAGGCTAATGGGAC 808
Query 1068 ACTAAAGCCTCTTGTTAAAGAGATAAAATCTGTTAATGTGAGCGATCATACGTTAGAGAT 1127
||||||||||||||| | ||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 809 ACTAAAGCCTCTTGTGAGAGAAATAAAAGCTGTTAATGTGAGTGATCATACGTTAGAGAT 868
Query 1128 TCGGTTGTATTGGGCGGGGAAAGGGACAACTCTCATTCCTAAAAGAGGAAATTATGGTCC 1187
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 869 TCGTTTTTATTGGGCGGGGAAAGGGACAACTCTCATTCCCAAAAGAGGAAATTATGGTCC 928
Query 1188 TCTTATCTCTGCAATCTCCTTGTGTCAC 1215
|||||||||||||||||| |||||||||
Sbjct 929 TCTTATCTCTGCAATCTCTTTGTGTCAC 956
Score = 597 bits (323), Expect = 1e-169
Identities = 381/409 (93%), Gaps = 3/409 (1%)
Strand=Plus/Plus
Query 1378 GGAAAAAGCCCCCTGAAACTGGACTGGGAAGCAAGACAAAAAATCTGTGTGGGAATCGCA 1437
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1448 GGAAAAATCCCCCTGAAACTGGACTGGGCAGCAAGACAAAAAATCTGTGTGGGAATCTCA 1507
Query 1438 AGAGGACTTGAATTCCTCCACGAAGGATCAATGATCAGGATGGTTCACCGTGACATAAAA 1497
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1508 AGAGGACTTGAATTCCTCCACGAATGATCAATGATCAGGATGGTTCATCGTGACATAAAA 1567
Query 1498 ACAACTAACGTGCTTCTAGACGTTGACTTTAATGCAAAGATATCGGACTTTGGATTGGCT 1557
|| ||||| |||||||||||| |||| |||||||||||||||| |||||||||||||||
Sbjct 1568 ACCACTAATGTGCTTCTAGACACTGACCTTAATGCAAAGATATCTGACTTTGGATTGGCT 1627
Query 1558 AGGCTCCATGAAGAAGAACACACTCACATTAGCACAAAAGTTGCAGGAA-C-CGGATATA 1615
||||||||||||| ||||||||||||||||||||| ||||| ||||||| | ||||||||
Sbjct 1628 AGGCTCCATGAAGCAGAACACACTCACATTAGCACTAAAGTGGCAGGAACCACGGATATA 1687
Query 1616 TGGCTCCAGAATATGCGTTATGGGGTCAACTGACAGAGAAAGCAGATGTGTACAGCTTTG 1675
||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1688 TGGCTCCCGAATATGCATTATGGGGTCAACTAACAGAGAAAGCAGACGTGTACAGCTTCA 1747
Query 1676 GAGTTGTGGCAATGGAAATTGTTAGTGGAAAGAGTAATATGAAACAACAGGGAAGTGCTG 1735
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1748 GAGTTGTGGCAATGGAAATTGTTAGTGGAAAGAGTAATACGAAACAGCAGGGAAGTGCTG 1807
Query 1736 ATCACGTCTCGCTTATCAATTG-GGCGCTAACACTGCAACAGAAAGGGG 1783
| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1808 AAAACGTCTCGCTTATCAATTGAGGCGCTGACACTGCAACAGAAAGGGG 1856
Score = 206 bits (111), Expect = 8e-52
Identities = 115/117 (98%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1216 TTGAGAGCCCAGGGTCTGCAAACGGTTTGGTTTACTTGGAGGCGACTCCAAGCTGCAACA 1275
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1116 TTGAGAGCCCAGGGTCTGCAAACGGTTTGGTTTACTTGGAAGCGACTCCAAGCTGCAACA 1175
Query 1276 AACAATTTTGCTCAAAGCAACAAACTTGGAGAAGGAGGTTTTGGATCCGTATTCAAA 1332
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 AACAATTTTGCTCAAACCAACAAACTTGGAGAAGGAGGTTTTGGATCCGTATTCAAA 1232
> AT1G29720.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:10393797-10399873 REVERSE LENGTH=3259
Length=3259
Score = 566 bits (306), Expect = 3e-160
Identities = 408/457 (89%), Gaps = 7/457 (2%)
Strand=Plus/Plus
Query 1378 GGA-AAAAGCCCCCTGAAACTGGACTGGGAAGCAAGACAAAAAATCTGTGTGGGAATCGC 1436
||| |||| | || ||||| ||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 2380 GGACAAAA-CTCCTTGAAATTGGACTGGGCAGCAAGACAAAAAATATGTGTTGGAATCGC 2438
Query 1437 AAGAGGACTTGAATTCCTCCACGAAGGATCAATGATCAGGATGGTTCACCGTGACATAAA 1496
|||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||
Sbjct 2439 AAGAGGGCTTGAATTCCTCCACGATGGATCAGCGATGAGAATGGTTCACCGTGACATAAA 2498
Query 1497 AACAACTAACGTGCTTCTAGACGTTGACTTTAATGCAAAGATATCGGACTTTGGATTGGC 1556
||| ||||| |||||||||||| ||| |||||||||| ||||| ||||||||||| ||
Sbjct 2499 AACCACTAATGTGCTTCTAGACACCGACCTTAATGCAAAAATATCTGACTTTGGATTAGC 2558
Query 1557 TAGGCTCCATGAAGAAGAACACACTCACATTAGCACAAAAGTTGCAGGAA-C--CGGATA 1613
|||||| ||||||| ||||||||||||||||||||| || |||||||||| | ||||||
Sbjct 2559 TAGGCTTCATGAAGCAGAACACACTCACATTAGCACCAAGGTTGCAGGAACCATCGGATA 2618
Query 1614 TATGGCTCCAGAATATGCGTTATGGGGTCAACTGACAGAGAAAGCAGATGTGTACAGCTT 1673
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2619 TATGGCTCCAGAATATGCATTATGGGGTCAACTGACAGAGAAAGCAGATGTGTACAGCTT 2678
Query 1674 TGGAGTTGTGGCAATGGAAATTGTTAGTGGAAAGAGTAATATGAAACAACAGGGAAGTGC 1733
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||
Sbjct 2679 CGGAGTTGTGGCAATGGAAATTGTTAGTGGAAAGAGTAATACCAAACAGCAGGGAAATGC 2738
Query 1734 TGATCA-CGTCTCGCTTATCAATTGGGCGCTAACACTGCAACAGAAAGGGGACATAATGG 1792
|||| | |||||||||||||||||||||||| || |||||||||| |||||||||| |||
Sbjct 2739 TGAT-AGCGTCTCGCTTATCAATTGGGCGCTGACGCTGCAACAGACAGGGGACATACTGG 2797
Query 1793 AGATCATAGATCCAATCCTCGAAGGTGATTTCAATAG 1829
|||| |||||| ||| || || ||||| ||||||||
Sbjct 2798 AGATTGTAGATCGAATGCTTGAGGGTGAGTTCAATAG 2834
Score = 468 bits (253), Expect = 1e-130
Identities = 493/603 (82%), Gaps = 40/603 (7%)
Strand=Plus/Plus
Query 633 TCATCGATTTCTACATATAAATTGTGGTGGAG-ACAAGATAGT-TATCACAAACT-CTTC 689
||| ||||||||||||||||| |||||||||| | ||| || | ||| | ||||| |||
Sbjct 1311 TCAGCGATTTCTACATATAAACTGTGGTGGAGAAGAAG-TA-TCTATTAGAAACTCCTT- 1367
Query 690 TTATGAAACCACTTATCAACCTGATAAC--T--ACAAATTCAACGCGGCAACAAATCAGC 745
| ||| || |||||| |||||||| | |||| |||||| ||| |||||||||
Sbjct 1368 GGGTAAAATAACGTATCAAACTGATAACAGTCGTCAAA-CCAACGCTGCATCAAATCAGC 1426
Query 746 GTTTTGGA-AACTGGGGAATCAGTAACACTGGTGCA-TTCACGGATTATCTTAGTGA-GA 802
|| || | |||||| |||||||||| |||| | || || ||| || |||||| |
Sbjct 1427 -AGTTCGATTATTGGGGAGTCAGTAACACAGGTG-ACTTTACCGATGATAATAGTGATCA 1484
Query 803 --AGGAGCAGCTCATCTTTTCAACTAGTTT-ACCACTATCTGGA-AATGCTCCTGATATT 858
| ||| | || | | ||||||| ||| ||| || |||||| | | ||||||| ||
Sbjct 1485 TGATGAGTA-CT-A-CACGTCAACTAATTTAACC-CTGTCTGGAGACT-ATCCTGATCTT 1539
Query 859 TATAAGACTGCGCGTCGATCTGCTCTCTCT-TTAGCTTATTATGCATTTTGCTTGCAAAA 917
||||||||||| |||||||||||||| ||| || | |||||||||||| |||||| ||||
Sbjct 1540 TATAAGACTGCACGTCGATCTGCTCTATCTCTT-GTTTATTATGCATTCTGCTTGGAAAA 1598
Query 918 TGG-AGCTTACAATGTGAAACTACATTTTATGGGGATTCAGTTTTCTGATC-AAGAACTA 975
||| | | ||||||||||||||||||||||||| ||||||||||||||| | ||||| ||
Sbjct 1599 TGGAAAC-TACAATGTGAAACTACATTTTATGGAGATTCAGTTTTCTGA-CAAAGAAGTA 1656
Query 976 TATAGCCGTCTTGGAAAACGCATATTTGATGTCTATGTTCAGGGAGAATTGTTCTTGAGA 1035
|| ||||||||||| | |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1657 TACAGCCGTCTTGGCAGACGCATATTTGATGTCTATGTTCAGGGAAAATTATTCTTGAGG 1716
Query 1036 GATTTTAACATCAAAGAA-TTGGCTAATGGGACACTA--AAGCCTCTTGTTAAAGAGATA 1092
|||||||||||| || || ||||||| ||| | || |||||| || ||||||| ||
Sbjct 1717 GATTTTAACATC-AACAAGGAGGCTAAT-GGA-AATATGAAGCCTGTTATTAAAGAAAT- 1772
Query 1093 AAATCTGTTAATGTGAGCGATCATACGTTAGAGATTCGGTTGTATTGGGCGGGGAAAGGG 1152
||| | | | ||||| | |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1773 AAA-C-GCGACTGTGACCAATCATATGTTGGAGATTCGGTTGTATTGGGCGGGGAAAGGG 1830
Query 1153 ACAACTCTCATTCCTAAAAGAGGAAATTATGGTCCTCTTATCTCTGCAATCTCCTTGTGT 1212
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1831 ACAACCCTCATTCCTAAAAGAGGAAATTATGGTCCTCTTATCTCTGCTATCTCCTTGTGT 1890
Query 1213 CAC 1215
|||
Sbjct 1891 CAC 1893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91013588085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5