BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912778
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29730.1 | Symbols: | Leucine-rich repeat transmembrane pro... 268 4e-71
AT1G29740.1 | Symbols: | Leucine-rich repeat transmembrane pro... 261 6e-69
AT1G29720.1 | Symbols: | Leucine-rich repeat transmembrane pro... 119 4e-26
> AT1G29730.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:10400564-10405874 REVERSE LENGTH=3056
Length=3056
Score = 268 bits (145), Expect = 4e-71
Identities = 221/256 (86%), Gaps = 12/256 (5%)
Strand=Plus/Plus
Query 46 AGTGGAAGCGCTCAAGGGTATTGCAGC-GACAC-TCTCGGTGTGAAGTACCTGAACCTAA 103
|||||||||||| |||| || | || | || || | | ||||||||| || |||||||||
Sbjct 129 AGTGGAAGCGCTGAAGGATA-T-CA-CTGAAACAT-TGGGTGTGAAGCACTTGAACCTAA 184
Query 104 GTGAAGATCCATGTCTCACAAAGACTCTGGTGATATCTCAAGGTGCTC-CGAATGAAGGA 162
|||||||||||||||||||||||||||| |||||||||||||||| || | || ||||||
Sbjct 185 GTGAAGATCCATGTCTCACAAAGACTCTAGTGATATCTCAAGGTGTTCTC-AAGGAAGGA 243
Query 163 CAGAACAGCACAATCAGATGTGACTGTCATTTTGAA-AACAACACCACTTGTCATATCAC 221
|||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||
Sbjct 244 CAGAACAGCACAATCAGATGTGACTGTCATTTC-AATAACTACAGCACTTGTCATATCAA 302
Query 222 ACGCTTTGTCCTCAAGACATTCAGTCTTCCAGGTCGACTTCCACCGAAT-CTGAACAAGT 280
|| |||||||||| ||| ||||| |||||||||| ||||||| || ||| ||| ||||||
Sbjct 303 ACACTTTGTCCTCCAGAAATTCAATCTTCCAGGTAGACTTCCTCC-AATGCTGTACAAGT 361
Query 281 TGCAGTATCTTGAATC 296
| | | ||||||||||
Sbjct 362 TTCGGCATCTTGAATC 377
> AT1G29740.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:10407379-10412997 REVERSE LENGTH=3237
Length=3237
Score = 261 bits (141), Expect = 6e-69
Identities = 218/254 (86%), Gaps = 10/254 (4%)
Strand=Plus/Plus
Query 46 AGTGGAAGCGCTCAAGGGTATTGCAGCGACACTCTCGGTGTGAAGTACCTGAACCTAAGT 105
|||||||||||| |||| ||||||| |||| ||||||||||| || |||||||||||
Sbjct 129 AGTGGAAGCGCTTAAGGATATTGCATTGACA--CTCGGTGTGAAACACTTGAACCTAAGT 186
Query 106 GAAGATCCATGTCTCACAAAGACTCTGGTGATATCTCAAGGTGCTC-CGAATGAAGGACA 164
||||||||||||||||||||||||||||| ||| |||||| || || | || ||||||||
Sbjct 187 GAAGATCCATGTCTCACAAAGACTCTGGTTATAACTCAAGATGTTCTC-AAGGAAGGACA 245
Query 165 GAACAGCACAATCAGATGTGACTGTCATTTTGAA-AACAACACCACTTGTCATATCACAC 223
||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||
Sbjct 246 AAACAGCACAATCAGATGTGACTGTCATTTC-AACAACAACAATACTTGTCATATTACAC 304
Query 224 GCTTTGTCCTCAAGACATTCAGTCTTCCAGGTCGACTTCCACC-GAATCTGAACAAG-TT 281
||||||||| ||||||||||||||||| ||| |||||||||| |||| | ||| ||
Sbjct 305 ACTTTGTCCTTAAGACATTCAGTCTTCCTGGTAGACTTCCACCAGAATTTTCG-AAGCTT 363
Query 282 GCAGTATCTTGAAT 295
| |||||||||||
Sbjct 364 -CGGTATCTTGAAT 376
> AT1G29720.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:10393797-10399873 REVERSE LENGTH=3259
Length=3259
Score = 119 bits (64), Expect = 4e-26
Identities = 93/107 (87%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 300 AGGAGACATAATGGAGATCGTAGATCCAATCCTTGAAGGTGATTTCAACAGTGA-TGAAG 358
||| |||||| ||||||| ||||||| ||| ||||| ||||| ||||| || | |||||
Sbjct 2784 AGGGGACATACTGGAGATTGTAGATCGAATGCTTGAGGGTGAGTTCAATAG-AAGTGAAG 2842
Query 359 CAGTAAGGATGATCAAAGTTGCTCTCGTTTGCACAAACTCGTCTCCT 405
| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2843 CCGTGAGGATGATCAAAGTTGCTCTCGTTTGCACAAACTCATCTCCT 2889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5