BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912787
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29810.1 | Symbols: | Transcriptional coactivator/pterin de... 909 0.0
> AT1G29810.1 | Symbols: | Transcriptional coactivator/pterin
dehydratase | chr1:10435374-10437506 REVERSE LENGTH=896
Length=896
Score = 909 bits (492), Expect = 0.0
Identities = 541/565 (96%), Gaps = 2/565 (0%)
Strand=Plus/Plus
Query 1 ATGAGTCGGCTCTTGCTACCTAAACTTTTCTCAATCTCCAGAACACAGGTTCCAGCTGCA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 101 ATGAGTCGGCTCTTGCTACCTAAACTTTTCTCAATCTCTAGAACACAGGTTCCAGCTGCA 160
Query 61 TCATTGCTCAACAATCTGTACGGACGTCACAAACGTTTTGTTCATTGGACGAGTAAGATG 120
|||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 161 TCATTGTTCAATAATCTGTACAGACGTCACAAACGTTTTGTTCATTGGACGAGTAAGATG 220
Query 121 TC-ACAAGATAGTGTAATTTCATCCACAGCTGGTGGTTCTGCTTCTGGAGCTAGAACATT 179
|| || ||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 221 TCAAC-AGATAGTGTTAGATCATCCACAACTGGTGGTTCTGCTTCTGGAGCTAGAACATT 279
Query 180 TTGCTCCCTAGAAGATTTATTAGCCAAAAAGTGTGTGCCATGTAATTCCAAGGATCTGCG 239
||||||||| | |||||||| | ||||||||||||||||||| ||| | |||||||||||
Sbjct 280 TTGCTCCCTCGCAGATTTATCAACCAAAAAGTGTGTGCCATGCAATGCGAAGGATCTGCG 339
Query 240 CCCCATGACCGAACAAAATGCACAAGACCTACTTCAAAAGGTTACTGGATGGGATTTGGC 299
| ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 340 CGCCATGACCGAACAAAGTGCCCAAGACCTACTTCAAAAGGTTGCTGGATGGGATTTGGC 399
Query 300 CAATGACAATGATACATTAAAGCTGCATCGGTCATGGAGGGTGAAAAGTTTTACAAAGGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CAATGACAATGATACATTAAAGCTGCATCGGTCATGGAGGGTGAAAAGTTTTACAAAGGG 459
Query 360 GCTAGATTTCTTCAAACGTGTAGCTGATATCGCTGAATCAGAAGGTCATCACCCAGATTT 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GCTAGATTTCTTCCAACGTGTAGCTGATATCGCTGAATCAGAAGGTCATCACCCAGATTT 519
Query 420 GCATCTGGTCGGCTGGAATAATGTGAAAATCGAGATATGGACACATGCGATAGGTGGTTT 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 520 GCATCTGGTCGGCTGGAATAATGTGAAAATTGAGATATGGACACATGCGATAGGTGGTTT 579
Query 480 GACAGAAAACGACTTCATTCTTGCTGCTAAGATCAACGAGCTCCAAGTGGAAGATCTTCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GACAGAAAACGACTTCATTCTTGCTGCTAAGATCAACGAGCTCCAAGTGGAAGATCTTCT 639
Query 540 GAGGAAGAAGAAAGTTGCCAAGTGA 564
|||||||||||||||||| ||||||
Sbjct 640 GAGGAAGAAGAAAGTTGCTAAGTGA 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5