BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912808
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29980.1 | Symbols: | Protein of unknown function, DUF642 |... 1736 0.0
AT2G34510.1 | Symbols: | Protein of unknown function, DUF642 |... 809 0.0
> AT1G29980.1 | Symbols: | Protein of unknown function, DUF642
| chr1:10503278-10506117 REVERSE LENGTH=1480
Length=1480
Score = 1736 bits (940), Expect = 0.0
Identities = 1058/1115 (95%), Gaps = 8/1115 (1%)
Strand=Plus/Plus
Query 8 GTTTGGTTATCAACGGCGACTTCGAAACATCACCGTCAAATGGCTTCCCAGACGACGGAG 67
|||| || ||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 239 GTTTAGTGATCAACGGCGACTTCGAAACATCACCGTCAAGTGGCTTTCCTGACGACGGAG 298
Query 68 TAACCGACGGACCATCCGATATCCCAAGCTGGAAATCCAACGGTACGGTGGAGCTAATCA 127
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 TAACTGACGGACCATCCGATATCCCAAGCTGGAAATCCAACGGTACGGTGGAGCTAATAA 358
Query 128 ACTCCGGTCAAAAACAAGGCGGAATGATCCTCATTGTCCCACAAGGCCGTCACGCCGTCC 187
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATTCCGGTCAAAAACAAGGCGGAATGATCCTCATTGTCCCACAAGGCCGTCACGCCGTCC 418
Query 188 GATTAGGCAATGACGCAGAGATCAGCCAAGATCTAACGGTTGAGAAAGGTTTTGTCTACT 247
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 GATTAGGGAACGACGCAGAGATCAGCCAAGATCTAACGGTTGAGAAAGGTTTTGTCTATT 478
Query 248 CAGTCACGTTCAGTGCAGCTCGCACGTGCGCTCAACTCGAATCGATAAACGTGTCGGTGG 307
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 CAGTCACGTTCAGCGCTGCTCGCACGTGCGCTCAACTCGAATCGATAAACGTGTCGGTAG 538
Query 308 CGTCTGTGAACGCAGACGCGGATGATATGGTTGCGTCGCGAAACGTGGATTTGCAAACGC 367
|||||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||
Sbjct 539 CGTCTGTGAACGCAGACGCGGACGATATGCTGGCGTCGCGGAACGTTGATTTGCAAACGC 598
Query 368 TGTATAGCGTTCAAGGGTGGGATCCTTATGCATGGGCGTTTGAAGCGGAAGATGATCATG 427
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 599 TTTATAGCGTTCAAGGGTGGGACCCTTATGCGTGGGCGTTTGAAGCGGAAGATGATCATG 658
Query 428 TACGGTTGGTTTTTAAAAACCCGGGTATGGAAGATGACCCGACTTGTGGACCAATCATCG 487
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 TACGGTTGGTTTTTAAGAATCCGGGTATGGAAGATGATCCGACTTGTGGACCAATCATCG 718
Query 488 ATGACATTGCTATTAAGAAGCTCTTTACTCCTGATAAACCCAAAGATAATGCGGTGATTA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATGACATTGCTATTAAGAAGCTCTTTACTCCTGATAAACCCAAAGATAATGCGGTGATTA 778
Query 548 ATGGAGATTTCGAAGAAGGTCCATGGATGTTTAGGAACACGTCTCTTGGTGTTTTACTTC 607
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGGAGATTTCGAAGATGGTCCATGGATGTTTAGGAACACGTCTCTTGGTGTTTTACTTC 838
Query 608 CGACAAACCTCGACGAAGAAACCTCATCTCTTCCGGGTTGGACTGTTGAATCGAACAGGG 667
||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |
Sbjct 839 CGACAAACCTCGACGAAGAAATCTCGTCTCTTCCTGGTTGGACTGTTGAATCGAACAGAG 898
Query 668 CGGTTCGGTTTGTTGACTCGGATCACTTCTCAGTTCCAGGAGG-CAAACGAGCCGTTGAG 726
||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |||
Sbjct 899 CGGTTCGGTTTGTTGACTCGGATCACTTCTCTGTTCCAA-AGGGCAAACGAGCCGTCGAG 957
Query 727 TTACTCTCAGGCAAAGAAGGCATTATTTCACAAATGGTTGAGACCAAAGCAGATAAACCG 786
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 958 CTACTCTCAGGCAAAGAAGGAATTATTTCACAAATGGTTGAGACCAAAGCAGATAAGCCG 1017
Query 787 TACACATTGACTTTCTCGCTAGGACACGCAGGTGATAAATGCAAGGAACCATTGGCTATA 846
|||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 TACATATTGTCTTTCTCACTAGGCCACGCAGGTGATAAATGCAAGGAACCATTGGCTATT 1077
Query 847 ATGGCATTCGCAGGTGATCAGGCGCAGAACTTTCATTACATGGCGCAAGCGAACTCTAGT 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1078 ATGGCATTCGCAGGTGATCAGGCGCAGAACTTTCATTACATGGCGCAAGCGAACTCCAGT 1137
Query 907 TTCGAAAAGGCCGGTTTGAATTTCACGGCTAAGGCTGATCGAACCAGAGTCGCGTTCTAC 966
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1138 TTCGAAAAGGCCGGTTTGAATTTCACGGCTAAGGCTGATCGAACCAGAGTTGCGTTCTAC 1197
Query 967 AGTGTTTATTACAATACGAGGACTGATGATATGAGCTCCTTGTGTGGACCTGTGATCGAT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGTGTTTATTACAATACGAGGACTGATGATATGAGCTCCTTGTGTGGACCTGTGATCGAT 1257
Query 1027 GACGTTAGAGTTTGGTTCTCCGGGTCGAAGAGAATCGGAGCTGGATTTGGGTTTGGGTTT 1086
||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1258 GACGTTAGAGTGTGGTTCTCCGGGTCGAAGAGAATCGGAGCTGG----G--TTTGGGTTT 1311
Query 1087 TCGGTTTTTGTTCTTCTTGCTATCGTTTTGGTTTA 1121
| ||||||||||||||| | | ||| |||||||||
Sbjct 1312 TGGGTTTTTGTTCTTCTCGTTGTCGGTTTGGTTTA 1346
> AT2G34510.1 | Symbols: | Protein of unknown function, DUF642
| chr2:14543997-14546879 REVERSE LENGTH=1470
Length=1470
Score = 809 bits (438), Expect = 0.0
Identities = 864/1065 (81%), Gaps = 48/1065 (5%)
Strand=Plus/Plus
Query 19 AACGGCGACTTCGAAACATCACCGTCAAATGGCTTCCCAGACGACGGAGTAACCGACGGA 78
||||||||||| || ||| | |||||||| |||||||| || |||| | | | ||| |||
Sbjct 274 AACGGCGACTTTGAGACACCGCCGTCAAACGGCTTCCCTGATGACGCAATCATCGA-GGA 332
Query 79 C-CATCCGATATCCCAAGCTGGAAATCCAACGGTACGGTGGAGCTAATCAACTCCGGTCA 137
| | ||||| ||||| |||||| |||| | |||||||||||||||||||| ||||||||
Sbjct 333 CACCTCCGAGATCCCGAGCTGGCGATCCGATGGTACGGTGGAGCTAATCAAGTCCGGTCA 392
Query 138 AAAACAAGGCGGAATGATCCTCATTGTCCCACAAGGCCGTCACGCCGTCCGATTAGGCAA 197
|||||||||||| |||||| | || || || | ||||||||||| || ||||||| ||
Sbjct 393 AAAACAAGGCGGGATGATCTTGATCGTGCCTGAGGGCCGTCACGCTGTTAGATTAGGAAA 452
Query 198 TGACGCAGAGATCAGCCAAGATCTAACGGTTGAGAAAGGTTTTGTCTACTCAGTCACGTT 257
|| ||||||||||||||||| || ||||| |||||||| | | ||||||| ||||||||
Sbjct 453 CGATGCAGAGATCAGCCAAGAACTTACGGTGGAGAAAGGCTCTATCTACTCCGTCACGTT 512
Query 258 CAGTGCAGCTCGCACGTGCGCTCAACTCGAATCGATAAACGTGTCGGTGGCGTC-TGTGA 316
||||||||| ||||| || || |||||||| ||| | || || ||||| || || | ||
Sbjct 513 CAGTGCAGCCCGCACATGTGCACAACTCGAGTCGCTGAATGTTTCGGTAGCTTCTTCTG- 571
Query 317 ACGCAGACGCGGATGATATGGTTGCGTCGCGAAA-CGTGGATTTGCAAACGCTGTATAGC 375
| | | || | || | || |||| ||| | | || ||||||||| |||| |||
Sbjct 572 ATG-A-AC-C------TA---TCGCATCGC-AAACCATTGACTTGCAAACGGTGTACAGC 618
Query 376 GTTCAAGGGTGGGATCCTTATGCATGGGCGTTTGAAGCGGAAGAT-GATCATGTACGGTT 434
|||||||| |||||||| |||||||||||||||||||||| | | |||| || |||||
Sbjct 619 GTTCAAGGATGGGATCCATATGCATGGGCGTTTGAAGCGGTTG-TGGATCGCGTCCGGTT 677
Query 435 GGTTTTTAAAAACCCGGGTATGGAAGATGACCCGACTTGTGGACCAATCATCGATGACAT 494
||||||||| ||||| || ||||| ||||| || ||||||||||| ||||| || |||||
Sbjct 678 GGTTTTTAAGAACCCTGGCATGGAGGATGATCCTACTTGTGGACCTATCATTGACGACAT 737
Query 495 TGCTATTAAGAAGCTCTTTACTCCTGATAAACCCAAAGATAATGCGGTGATTAATGGAGA 554
||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 738 TGCCGTTAAGAAGCTCTTTACTCCTGATAAACCCAAAGGCAATGCAGTGATTAATGGAGA 797
Query 555 TTTCGAAGAAGGTCCATGGATGTTTAGGAACACGT-CTCTT-GGTGTTTTACTTCCGACA 612
||| ||||||||||||||||||||||||||||| | | ||| |||||| | ||||| |||
Sbjct 798 TTTTGAAGAAGGTCCATGGATGTTTAGGAACAC-TAC-CTTAGGTGTTCTGCTTCCAACA 855
Query 613 AACCTCGACGAAGAAACCTCATCTCTTCCGGGTTGGACTGTTGAATCGAACAGGGCGGTT 672
|||||||| ||||||| || |||||||| || ||||| || ||||||||| | || ||
Sbjct 856 AACCTCGATGAAGAAATATCGTCTCTTCCTGGATGGACCGTCGAATCGAACCGAGCAGTA 915
Query 673 CGGTTTGTTGACTCGGATCACTTCTCAGTTCCAGGAGGCAAA-CGAGCCGTTG-AG-TTA 729
|||||| ||||||| || || ||||| || || | ||| || ||||| ||| | ||
Sbjct 916 CGGTTTATTGACTCAGACCATTTCTCGGTCCCCG-AGGGGAAGCGAGCT-TTGGAACTTT 973
Query 730 CTCTCAGGCAAAGAAGGCATTATTTCACAAATGGTTGAGACCAAAG-CAGATAAA--CCG 786
| || |||||||||||||| ||||| |||||||||||||| |||| | || | | |||
Sbjct 974 -TATCGGGCAAAGAAGGCATAATTTCTCAAATGGTTGAGAC-AAAGGC-GA-ACATTCCG 1029
Query 787 TACAC-ATTGACTTTCTCGCTAGGACACGCAGGTGATAAATGCAAGGAACCATTGGCTAT 845
|||| || | ||||||| | ||||||||||| || || || |||||||| |||||| |
Sbjct 1030 TACAAGAT-GTCTTTCTCTTTGGGACACGCAGGGGACAAGTGTAAGGAACCTTTGGCTGT 1088
Query 846 AATGGCATTCGCAGGTGATCAGGCGCAGAACTTTCATTACATGGCGCAAGCGAACTCTAG 905
|||||| || || || ||||| || |||||||||||||| ||||||||||| ||||| ||
Sbjct 1089 AATGGCTTTTGCTGGAGATCAAGCACAGAACTTTCATTATATGGCGCAAGCAAACTCGAG 1148
Query 906 TTTCGAAAAGGCCGGT-TTGAATTTCACGGCTAAGGCTGATCGAACCAG-AGTCGCGTTC 963
|||||||| | ||| ||||| ||||| || || ||||| || || || | |||| |||
Sbjct 1149 TTTCGAAA-GATCGGAGTTGAACTTCACTGCGAAAGCTGAACGTACGAGGA-TCGCCTTC 1206
Query 964 TACAGTGTTTATTACAATACGAGGACTGATGATATGAGCTCC-TTGTGTGGACCTGTGAT 1022
||||| ||||||||||||||||||| || ||||||| || | |||||||||||||||||
Sbjct 1207 TACAGCATTTATTACAATACGAGGACGGACGATATGA-CTTCATTGTGTGGACCTGTGAT 1265
Query 1023 CGATGACGTTAGAG-TTTGGTTCTCCGGGTCGAAG-AGAATCGGA 1065
|||||||||| || |||||||||||||||| | | ||||| |||
Sbjct 1266 TGATGACGTTA-AGGTTTGGTTCTCCGGGTCTA-GTAGAATTGGA 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5