BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912819
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30080.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1733 0.0
> AT1G30080.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr1:10550947-10553215 REVERSE LENGTH=1559
Length=1559
Score = 1733 bits (938), Expect = 0.0
Identities = 1018/1058 (96%), Gaps = 0/1058 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAAAATGTTTAGCAGAATTGCCATGACCAACTCTATTGTTCTTCTTCTGTTTTCC 60
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 49 ATGTCTAACATGTTTAGCAGAATTGCCATGACCAACTCTATCGTTCTTCTTCTATTTTCC 108
Query 61 TTAACTTTCTTAGAACATGGATTGTTGTTTCAGAGGGTCTCCTCTCTTGGTATCAACTAT 120
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 109 TTGACTTTCTTAGAACATGGATTGTTGTTTCAAAGGGTCTCCTCTCTTGGCATCAACTAT 168
Query 121 GGTCAAGTCGGCGACAACCTTCCTCCACCGGACAAAGTTTTACAACTTTTGAGTTCACTC 180
||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 169 GGTCAAGTCGGCGACAATCTTCCTCCACCGGACAAAGTTCTACAACTCTTGAGTTCACTC 228
Query 181 CATATCAATAAGACAAGAATCTACGACACAAACCCTCGAGTCTTAACCTCATTTGCCAAT 240
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 229 CATATCAATAAGACAAGAATCTATGACACAAACCCTCGAGTGTTAACCTCATTTGCCAAT 288
Query 241 TCCAACATCGAGCTGTTCGTCACCGTGGAAAATGAAATGCTTCCCAGCTTAGTAGACCCT 300
||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 289 TCCAATATCGAGCTCTTTGTCACCGTCGAAAATGAAATGCTTCCCAGCTTAGTAGACCCT 348
Query 301 CAACAAGCTCTCCAATGGGTCAATACCCGTATCAAACCCTACTTTCCGGCCACCAAGATC 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 349 CAACAAGCTCTCCAATGGGTCACTACCCGTATCAAACCCTACTTTCCGGCCACCAAGATC 408
Query 361 GGGGGTATCGCCGTCGGCAACGAACTATACACTGACGATGACTCAAGCCTTATAGGGTAT 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GGTGGTATCGCCGTCGGCAACGAACTATACACTGACGATGACTCAAGCCTTATAGGGTAT 468
Query 421 CTTGTGCCTGCAATGATGAGCATTCATGGTGCTTTGGTCCAAACCGGACTAGACAAGTAC 480
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 469 CTTATGCCTGCAATGATGAGCATTCATGGGGCTTTGGTCCAAACCGGACTAGACAAGTAC 528
Query 481 ATTCAAGTATCAACTCCGAATTCACTATCGGTTCTTCAAGAATCTTACCCTCCCTCTGCC 540
||||||||||| |||||||| |||||||| || |||||||||||||||||||| || |||
Sbjct 529 ATTCAAGTATCGACTCCGAACTCACTATCCGTCCTTCAAGAATCTTACCCTCCATCCGCC 588
Query 541 GGATGTTTTAGGCCGGAGGTAGCTGGCGTAATGACGCAGCTCCTAGGTTTCTTGCGTAAC 600
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 589 GGATGTTTTAGGCCGGAAGTAGCTGGCGTAATGACACAGCTACTAGGTTTCTTGCGTAAC 648
Query 601 ACGAAATCCCCCTTCTGGATCAACGCTTACCCTTACTTCGCTTACAAGGATTCCCCAACA 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ACGAATTCCCCCTTCTGGATCAACGCTTACCCTTACTTCGCTTACAAGGATTCCCCAACA 708
Query 661 AAGATCCCATTAGACTACGTCCTCTTCAACCCTAACCCTGGAATGGTTGACCCCTACACC 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 709 AAGATCCCATTAGACTACGTCCTCTTCAACCCTAACCCTGGAATGGTTGACCCCTATACC 768
Query 721 AAGTACCACTATGACAACATGCTCTACGCTCAAGTAGACGCTGTGATCTTCGCCATGGCG 780
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 769 AAGTACCGCTATGACAACATGCTCTACGCTCAAGTAGACGCTGTGATCTTTGCCATGGCG 828
Query 781 AGGCTTGGCTTCAAAGACATCGAAGTTGGGGTCTCAGAGACTGGATGGCCGTCTAAAGGC 840
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 829 AGGCTTGGCTTCAAAGACATCGAAGTTGGGGTCTCGGAGACTGGATGGCCGTCTAAAGGC 888
Query 841 GATGGAGATGAGGTTGGAGCTACTGTGGCCAACGCAGCGGTTTATAACAAAAATCTTCTA 900
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct 889 GATGGAGATGAGGTTGGAGCCACTGTGGCCAACGCAGCCGTTTATAACAAAAATATTCTA 948
Query 901 AGGAGACAACTTCAAAATGAAGGAACGCCATTGAGACCAAACTTGAGTTTTGATGTTTAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AGGAGACAACTTCAAAATGAAGGAACGCCATTGAGACCAAACTTGAGTTTTGATGTTTAT 1008
Query 961 CTCTTTGCTCTTTTCAATGAAGACCTTAAACCAGGACCAACCTCTGAGAGGAACTATGGA 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1009 CTATTTGCTCTTTTCAATGAAGACCTTAAACCAGGACCAACCTCTGAGAGGAATTATGGA 1068
Query 1021 TTATATCAGCCTGATGAGACCATGGCTTACAATGTAGG 1058
|| ||||||||||||||||||||| |||||||||||||
Sbjct 1069 TTGTATCAGCCTGATGAGACCATGACTTACAATGTAGG 1106
Score = 122 bits (66), Expect = 5e-27
Identities = 72/75 (96%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 1057 GGCTATAAAGAAGGGAAAGCAACAATTGATGTATTGGACATGCGTTTATTTGTTGGCCAT 1116
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1188 GGCTTTAAAGAAGGGAAAGCAACGGTTGATGTATTGGACATGCGTTTATTTGTTGGCCAT 1247
Query 1117 TCACATGCTAATTAG 1131
|||||||||||||||
Sbjct 1248 TCACATGCTAATTAG 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5