BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912827
Length=396
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30135.1 | Symbols: JAZ8, TIFY5A | jasmonate-zim-domain prot... 566 7e-161
> AT1G30135.1 | Symbols: JAZ8, TIFY5A | jasmonate-zim-domain protein
8 | chr1:10596492-10597239 FORWARD LENGTH=564
Length=564
Score = 566 bits (306), Expect = 7e-161
Identities = 355/378 (94%), Gaps = 6/378 (2%)
Strand=Plus/Plus
Query 4 CAG-AAAACTTGCGACTTGGAACTTCGTCTTTTTCCCACTTCTTATGATTGTGATTCTTC 62
||| |||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 34 CAGCAAAA-TTGTGACTTGGAACTTCGTCTTTTTCCCACTTCTTATGATTCTGATTCTTC 92
Query 63 AGATACAACCTCTGTCGCAGAATCAACTAGTTCTGGAAATTTACAACCAAAGGAAGAATC 122
||||||||||||||| | ||||||||| |||||||||||| ||||||||| ||||||||
Sbjct 93 AGATACAACCTCTGTTGTAGAATCAACCAGTTCTGGAAATCCACAACCAAATGAAGAATC 152
Query 123 TCAAAGAATAACAATTTTCTACAACGGAAAAATGTGTTTTTCTTCAGATGTTACACATCT 182
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 153 TCAAAGAATAACAATTTTCTACAATGGAAAAATGTGTTTTTCTTCAGATGTTACCCATCT 212
Query 183 TCAGGCAAAATCGATAATATCGATCGCGAA-CAGAGAAATGGAAAA-GAAGTCATCCTCA 240
|||||||| |||||||||||||||||| || ||||||||| ||||| ||||||||||||
Sbjct 213 TCAGGCAAGATCGATAATATCGATCGC-AAGCAGAGAAAT-GAAAACCAAGTCATCCTCA 270
Query 241 AACGGGTCGGATCCTCCAAACAAGTCGACCCCATTTCATCATAATCAGCTTCCAAATCCA 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 271 AACGGGTCGGATCCTCCAAACAAGTCGACCTCATTTCATCATAATCAGCTTCCAAATCCA 330
Query 301 AAGGCATCAATGAAAAAATCTCTCCAAAGCTTTCTTCAGAAACGGAAAAGTCGAATTCAA 360
|| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 331 AAAGCATCAATGAAAAAATCTCTCCAAAGTTTTCTTCAGAAACGGAAAATTCGAATTCAA 390
Query 361 GCTACTTCACCTTACCAT 378
||||||||||| ||||||
Sbjct 391 GCTACTTCACCGTACCAT 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18699602628
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5