BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912828

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | ...   130    1e-29


> AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein 
| chr5:4122410-4128861 FORWARD LENGTH=4306
Length=4306

 Score =  130 bits (70),  Expect = 1e-29
 Identities = 80/85 (94%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  240   ATCATCTATCAGATCCTCAAGCTCTAGGTATGGTGGAAGATCCAATCAACCTACATATTC  299
             |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct  1165  ATCATCTATCAGATCCTCAAGCTCTAGGTATGGTGGAAGATCCAATCAGCTTGCATATTC  1224

Query  300   TATGGAAGGTGATCTGAAAAATGAG  324
             || |||||||||||||| |||||||
Sbjct  1225  TAGGGAAGGTGATCTGACAAATGAG  1249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5