BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912851
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30350.1 | Symbols: | Pectin lyase-like superfamily protein... 1546 0.0
AT1G11920.1 | Symbols: | Pectin lyase-like superfamily protein... 623 1e-177
> AT1G30350.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:10710079-10711664 REVERSE LENGTH=1222
Length=1222
Score = 1546 bits (837), Expect = 0.0
Identities = 1024/1114 (92%), Gaps = 14/1114 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCCCTCGTGTTAACAGTTTCACTTCTCTTGGCAACTTTCGCTTCTTCTCTTGTA 60
|||||||| |||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1 ATGGCTTCTCTCGTGGTAATAGTTTCACTTCTCTTGGCAGCTTTCGCTTCTCCTCTTTTA 60
Query 61 GAGACTGCTCATAGTAATAATGTAACCATCCCCAGGGTATCACTAAATGTAATTGATGCT 120
||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 61 GAGACTGCTCATAGTTATAATGTAACCGCCCCCAGGGTATCACTAAATCCAATTGATGCT 120
Query 121 TGCTGGCGAAGAAACCCTAATTGGGCCACTAACCGTCAAGCCCTAGCACATTGCGCGGTA 180
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 121 TGCTGGCGAAGAAACCCTAAATGGGCGACTAATCGTCAAGCCCTAGCACATTGCGCGGTA 180
Query 181 GGGTACGGGAAAGCCGCAGTAGGGGGGAAACACGGGCCGATCTACGTGGTTACAAACCCA 240
|||||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 181 GGGTACGGGAAAGCAGCAATAGGGGGAAAAAACGGTCCGATCTACGTGGTTACAAACCCA 240
Query 241 TCAGACAACCCTACAAGCCCTAGCCCCGGAACCTTAAGATTTGCGGTGACCCAACCAAAA 300
||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 241 TCAGACAACCCTACACGCCCTAGCCCCGGAACCTTAAGATATGCGGTGAGCCAACCTAAA 300
Query 301 CCACTATGGATCACATTCGCACGTGACATGGTGATAGTGTTGAAAAGCGAGCTCATGGTG 360
|| || ||||||||||| |||||||||||||||||||||||||||||| |||||||| |
Sbjct 301 CCGCTGTGGATCACATTTGCACGTGACATGGTGATAGTGTTGAAAAGCCAGCTCATGATT 360
Query 361 AACAGCTACAAGACGATCGATGGGAGAGGGGCAAAAGTTGAAATAGCCAACGGGCCATGC 420
|||||||||||||| ||||| || ||||||||||| |||||||| |||||||| ||||||
Sbjct 361 AACAGCTACAAGACAATCGACGGAAGAGGGGCAAAGGTTGAAATTGCCAACGGACCATGC 420
Query 421 TTAAGGATCAAACAAGTG-AGCCATGTCATTATACATGGTATTAGTATCCATGATTGTAA 479
|||||||||| ||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 421 TTAAGGATCAGACAAGTGAAG-CATGTCATTATACATGGGATAAGTATCCATGATTGTAA 479
Query 480 ACCAGGTTCCAAAGG-ATGGGATGGTGACGGAATACGAGTTTTTCAATCTACACATGTTT 538
| ||| | |||| || || ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 480 AGCAGATCCCAATGGAAT-GGATGGTGATGGAATACGCGTTTTTCAATCTACACATGTTT 538
Query 539 GGATCGATCATTGTTTCTTTTCTCGGTGTCAAGATGGTTTGATCGATGTGATTCTTTCTT 598
||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||
Sbjct 539 GGATCGATCATTGTTTCCTTTCTCGGTGCCATGATGGTTTGATCGATGTGATTGTTTCTT 598
Query 599 CTACGGCTATCACTATTTCTAATAACTACTTCACGCAGCATGATAAAGTGATATTACTCG 658
|||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 599 CTACGGCTGTCACGATTTCAAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCG 658
Query 659 GACATGATGACAATTACATGGGAGATAA-AATCATGAGAGTTACCATTGCATTCAATACT 717
|||||||||||| ||| ||||||||||| | |||||||||||| |||||||||||||||
Sbjct 659 GACATGATGACAGTTATATGGGAGATAAGGA-CATGAGAGTTACAATTGCATTCAATACT 717
Query 718 TTTGGACCGGGTCTGATTGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCGCATGTAGCA 777
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 TTTGGACCGGGTCTCATTGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCACATGTAGCA 777
Query 778 AACAATAGGTACGAGAAATGGCAAATGTATGCGATTGGAGGAAGTGCTAATCCAATTATC 837
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 778 AACAATAGGTACGAGAAATGGCAAATGTACGCGATCGGAGGAAGTGCTAATCCAATTATC 837
Query 838 TTTAGTGAAGGCAACTACTTCGTTGCTCCCGACAAA-GCTAGCAACAAACAGGTGACGAA 896
|||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 838 TTTAGTGAAGGCAACTACTTCGTTGCTCCCGAAAAACG-TAGCAGCAAACAGGTGACGAA 896
Query 897 GAGAATGGGTG-CGGGACCTGATTCTAAAAGATGGAAATGGGGTACGGCTAAAGACGTTT 955
||||||| || | ||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 897 GAGAATGA-TGGCTGGACCTGATTCTAAAAGATGGAAATGGGGTACGTCTAGAGATGTTT 955
Query 956 TCATGAACGGAGCTTTCTTCGTG-CCGTCTGGCGGAATAGTCAGGCCATTGTACAAAGCA 1014
||||||||||||||||||||| | ||| | || | |||||||||||| |||||||||| |
Sbjct 956 TCATGAACGGAGCTTTCTTCG-GACCGCCAGGAGTAATAGTCAGGCCGTTGTACAAAGGA 1014
Query 1015 GGAGAGGGGTTTCAGGTCGCCCATGGCTCTCTCGTCCCTTCTCTTACTTCCTCTGCCGGT 1074
||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GGAGAGGGGTTTCGGGTGGCACATGGCTCTCTCGTCCCTTCTCTTACTTCCTCTGCCGGT 1074
Query 1075 CCTCTCCGTTGCTACG-CAGGCAGGATTTGCTAA 1107
|||||||||||||||| | |||||||||||||||
Sbjct 1075 CCTCTCCGTTGCTACGTC-GGCAGGATTTGCTAA 1107
> AT1G11920.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:4023667-4025097 REVERSE LENGTH=1155
Length=1155
Score = 623 bits (337), Expect = 1e-177
Identities = 537/631 (85%), Gaps = 23/631 (4%)
Strand=Plus/Plus
Query 490 AAAGGATGGGATGGTGACGGAATA-CGAGTTTTTCAATC-TACACATGTTTGGATCGATC 547
||||||| ||| ||||| | |||| | | ||||| | || | ||||| ||||||| ||||
Sbjct 535 AAAGGATCGGACGGTGATGCAATAGCCA-TTTTTGATTCGT-CACATATTTGGATTGATC 592
Query 548 ATTGTTTCTTTTCTCGGTGTCAAGATGGTTTGATCGATGTGA-TTCTTTCTTCTACGGCT 606
|||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct 593 ATTGTTTCTTTTCTCGGTGTCAAGATGGTTTGATCGATGT-ACTTCATGCTTCTACGGCT 651
Query 607 ATCACTATTTCTAATAACTACTTCACGCAGCATGATAAAGTGATATTACTCGGACATGAT 666
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 652 GTCACTATTTCTAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATAAT 711
Query 667 GACAATTACATG-GG-AGATAAAATCATGAGAGTTACCATTGCATTCAATAC-TTTTGGA 723
||||| || ||| || |||||| |||||||||||||| ||||| ||||| | ||| |||
Sbjct 712 GACAA-TA-ATGTGGAAGATAAGATCATGAGAGTTACAATTGCGTTCAA-CCATTTCGGA 768
Query 724 CCGGGTCTGATTGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCGCATGTAGCAAACAAT 783
|||||||| ||||||||||||||||| ||| | ||||| |||||||||||||||||||||
Sbjct 769 CCGGGTCTTATTGAGAGAATGCCTAGAGTGCGAAGAGGATATGCGCATGTAGCAAACAAT 828
Query 784 AGGTACGAGAAATGGCAAATGTATGCGATTGGAGGAAGTGCTAATCCAATTATCTTTAGT 843
||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||
Sbjct 829 AGGTACGAGAAATGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATTTTTAGT 888
Query 844 GAAGGCAACTACTTCGTTGCTCCCGACAAAGCTAGCAACAAACAGGTGACGAAGAGAATG 903
||||||||||||||||||||| | || | ||||||| ||||||||||| || |||||
Sbjct 889 GAAGGCAACTACTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATA 948
Query 904 GGT-GCGGGACCTGATTCTAAAAGATGGAAATGGGGTACGGCTAAAGACGTTTTCATGAA 962
| | | || | ||||| || |||||||||||| | ||| | ||||||||||| | |||
Sbjct 949 GATAGTGG-ATATGATTGGAAGAGATGGAAATGGAGAACGTCCAAAGACGTTTTTAAGAA 1007
Query 963 CGGAGCTTTCTTCGTGCCGTCTGGC---GGAATAGTCAGGCCATTGTACA-AAGCAGGAG 1018
|||||||| ||||||||| |||||| |||| |||| ||| |||||| ||| || ||
Sbjct 1008 CGGAGCTTACTTCGTGCCTTCTGGCTACGGAACCGTCACGCCGTTGTACGGAAG-AGCAG 1066
Query 1019 AGGGGTTTCAGGTCGCC-CATGGCTCTCTCGTCCCTTCT-CTTACTTCCTCTGCCGGTCC 1076
|| |||||| ||| | | || |||||||||||||||| | |||||||| || ||||||||
Sbjct 1067 AGCGGTTTCCGGT-GTCTCACGGCTCTCTCGTCCCTT-TGCTTACTTCATCCGCCGGTCC 1124
Query 1077 TCTCCGTTGCTACGCAGGCAGGATTTGCTAA 1107
||||| |||||| | ||||| |||||||||
Sbjct 1125 TCTCCATTGCTATTCCGGCAGAATTTGCTAA 1155
Score = 425 bits (230), Expect = 3e-118
Identities = 392/470 (83%), Gaps = 12/470 (3%)
Strand=Plus/Plus
Query 23 TTTCACTTCTCTTGGCAACTTTCGCTTCTTCTCTTGTAGAGACTGCTCATAGTAATAATG 82
||||||||||||| ||| ||||| |||||||| |||||||| ||||| | |||||| |
Sbjct 26 TTTCACTTCTCTTTGCAGCTTTCTCTTCTTCTGTTGTAGAGGCTGCTTACAGTAATGGT- 84
Query 83 TA-ACCATCCCCAGGGTATCACTAAA-TGTAATTGATGCTTGCTGGCGAAGAAACCCTAA 140
|| ||||| |||| ||| || ||| | || ||| |||||||||||||||||||| |
Sbjct 85 TATACCATTCCCAAACTATTACCAAACCCT-ATCGATTCTTGCTGGCGAAGAAACCCTTA 143
Query 141 TTGGGCCACTAACCGTCAAGCCCTAGCAC-ATTGCGCGGTAGGGTACGGGAAAGCCGCAG 199
|||||| ||||||||| || ||||| | ||||||||||||||| || ||| | || |
Sbjct 144 TTGGGCGTCTAACCGTCGTGCACTAGC-CGATTGCGCGGTAGGGTTTGGAAAATCTGCGG 202
Query 200 TAGGGGGGAAACACGGGCCGATCTACGTGGTTACAAACCCATCAGACAACCCT-ACAAGC 258
| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||| | || |
Sbjct 203 TTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAACCCATCAGACGACCCTGAAAA-C 261
Query 259 CCTAGCCCCGGAAC-CTTAAGATTTGCGGTGACCCAACCAAAACCACTATGGATCACATT 317
||||| |||||||| || | ||| || |||| |||| | |||||| |||||||||||||
Sbjct 262 CCTAGACCCGGAACACTGA-GATACGCAGTGATCCAATCTAAACCATTATGGATCACATT 320
Query 318 CGCACGTGACATGGTGATAGTGTTGAA-AAGCGAGCTCATGGTGAACAGCTACAAGACGA 376
|||||||||||||| ||||||||| || ||||||||| ||||||||||||||||||
Sbjct 321 TGCACGTGACATGGTCATAGTGTTGCGTAA-CGAGCTCATCATGAACAGCTACAAGACGA 379
Query 377 TCGATGGGAGAGGGGCAAAAGTTGAAATAGCCAACGGGCCATGCTTAAGGATCAAACAAG 436
| ||||| |||||||| ||||| ||||| ||| | || |||||| ||| |||| |||| |
Sbjct 380 TTGATGGAAGAGGGGCTAAAGTGGAAATTGCCTATGGACCATGCATAACGATCCAACATG 439
Query 437 TGAGCCATGTCATTATACATGGTATTAGTATCCATGATTGTAAACCAGGT 486
|||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 440 TGAGCCATGTCATTATACATGGGATAAGTATCCATGATTGTAAACCGGGT 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5