BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912864
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases... 324 3e-88
> AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases
| chr5:16760908-16764276 FORWARD LENGTH=1620
Length=1620
Score = 324 bits (175), Expect = 3e-88
Identities = 231/257 (90%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 1 GCTCTATCACTGCGGACATGCGTAGAAGAAATTGTCTTCAACTTTATATATCCTCGAATT 60
||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1023 GCTCTATCACTGCGGACGTGCGTAGAAGAAATTGTCTTCACCTTTACGTATCCTCGAATT 1082
Query 61 GATTTGGAGGTCTCCaaaa-aaaTGAACCATTTGCTTAAGGCACCCTTCTGTGTCCATCC 119
||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1083 GATTTGGAGGT-TTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCC 1141
Query 120 AAACACAGGTCGTGTCTGTGTTCCTATTGATCCGAATAACTGCGATGAGTTTGATCCATT 179
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1142 AAAAACAGGTCGTGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATT 1201
Query 180 ATTGGAAGTTCCAACACTTTCACAGATCATAGAAGAGATCAACTCAGCAGGCCTCA-ATA 238
|| ||||||||| ||||||||| | |||||||| ||||| || | ||||||| | |
Sbjct 1202 ---GGCAGTTCCAACTCTTTCACAGCTAATAGAAGAAATCAATTCCGGTGGCCTCAGA-A 1257
Query 239 TGGATGTGGATGATGAT 255
|||| ||||||||||||
Sbjct 1258 TGGACGTGGATGATGAT 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11611850019
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5