BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg912864 Length=255 Score E Sequences producing significant alignments: (Bits) Value AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases... 324 3e-88 > AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases | chr5:16760908-16764276 FORWARD LENGTH=1620 Length=1620 Score = 324 bits (175), Expect = 3e-88 Identities = 231/257 (90%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 1 GCTCTATCACTGCGGACATGCGTAGAAGAAATTGTCTTCAACTTTATATATCCTCGAATT 60 ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct 1023 GCTCTATCACTGCGGACGTGCGTAGAAGAAATTGTCTTCACCTTTACGTATCCTCGAATT 1082 Query 61 GATTTGGAGGTCTCCaaaa-aaaTGAACCATTTGCTTAAGGCACCCTTCTGTGTCCATCC 119 ||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1083 GATTTGGAGGT-TTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCC 1141 Query 120 AAACACAGGTCGTGTCTGTGTTCCTATTGATCCGAATAACTGCGATGAGTTTGATCCATT 179 ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1142 AAAAACAGGTCGTGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATT 1201 Query 180 ATTGGAAGTTCCAACACTTTCACAGATCATAGAAGAGATCAACTCAGCAGGCCTCA-ATA 238 || ||||||||| ||||||||| | |||||||| ||||| || | ||||||| | | Sbjct 1202 ---GGCAGTTCCAACTCTTTCACAGCTAATAGAAGAAATCAATTCCGGTGGCCTCAGA-A 1257 Query 239 TGGATGTGGATGATGAT 255 |||| |||||||||||| Sbjct 1258 TGGACGTGGATGATGAT 1274 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11611850019 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5