BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912865
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases... 370 4e-102
> AT5G41880.1 | Symbols: POLA3, POLA4 | DNA primases;DNA primases
| chr5:16760908-16764276 FORWARD LENGTH=1620
Length=1620
Score = 370 bits (200), Expect = 4e-102
Identities = 255/281 (91%), Gaps = 5/281 (2%)
Strand=Plus/Plus
Query 1 ATGAACAAAGATCAGCAGTCT-CTGAATACTTCCGTGTTTATAAAGGGAAATGAGAACAG 59
||||||||||||||||||| | |||||||||| ||||||||| ||||||||||| ||||
Sbjct 679 ATGAACAAAGATCAGCAGT-TGCTGAATACTTTCGTGTTTAT-AAGGGAAATGAAAACAA 736
Query 60 TGCCAAAAATGTCGATCTGATGGGTCATTCTCATCAACCGTTTCTCGCGAGATCATGTGT 119
||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||| |||
Sbjct 737 TGCAAAAAAGGTCGATCTGATGGGTCATTCTCTTCATCCGTTTCTTGCGAGATCATATGT 796
Query 120 GGACTTT-TTAAAGAATTTCTTTGAGGATGAGTTACATGCAACTCAAAGTATATTCTCAA 178
||||||| || |||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 797 GGACTTTATT-AAGAGTTTCTTTGAGGGTGAGTTACAAGCAACTCAAAGTATATTCTCAA 855
Query 179 GCAAAGAAAAATATGAGAAGATACTTGGCATGATAACAGATGAAGATATTCAATCAGAGC 238
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 856 GCAAAGAAAAGTATGAGAAGATACTTGGGATGATTACAGATGAAGATATTCAAGCAGACC 915
Query 239 TGAGAGGGGAGTGGGAGAATTCTGCGAGATCATCTCCATCA 279
| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 916 TCAGAGGAAAGTGGGAGAATTCTGCGAGATCATCTCTATCA 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12969079242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5