BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912871
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30473.1 | Symbols: | Heavy metal transport/detoxification ... 791 0.0
> AT1G30473.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr1:10786979-10788683 FORWARD LENGTH=1532
Length=1532
Score = 791 bits (428), Expect = 0.0
Identities = 568/631 (90%), Gaps = 27/631 (4%)
Strand=Plus/Plus
Query 1 ATGGCGAACCCAAACCAATCCGTCCGGACTTGCATACTAAAAGTCGATCTAAAGTGTTGC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 237 ATGGCGAACCCAAACCAATCCGTCCGGACGTGCATACTAAAAGTCGATCTAAAGTGTTGC 296
Query 61 ACCGGTTGCCaaaaaaaaGCAAGCATGAAATTGCGGAGAATCTCTGGTGTCGACGAAGTG 120
| ||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||
Sbjct 297 ATTGGTTGCCAAAAAAAAGCAAGCATGAAATTGCAGAGTATCTCTGGTGTAGAGGAAGTG 356
Query 121 GAGTATAACAGCGAAAAACGGCTCATGACAGTCACAGGTGACGTAGAACCGATGGCTCTG 180
|||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||||
Sbjct 357 GAGTATAACATCGAAAAAGGGCTCATGACAGTCAGAGGTGACGTAGAACCCATGGCTCTG 416
Query 181 GTTCGTAAACTTACTAAATATCG-CATAAAAACAGAGCTTTTCTCAGTCAAGTACCAGCT 239
||||||||||||| |||| || | || |||||||||||||||||||||||||||||||||
Sbjct 417 GTTCGTAAACTTAATAAACAT-GACAGAAAAACAGAGCTTTTCTCAGTCAAGTACCAGCT 475
Query 240 TGATGATGATGATCTAAACAGTGATG-ATGAAGACGGCACTTCTTCTGACTCTACTAGTT 298
||||||||||||||||||||||||| | |||||| | |||||||||||||||||| ||
Sbjct 476 TGATGATGATGATCTAAACAGTGATTCA-GAAGACTACTCTTCTTCTGACTCTACTAATT 534
Query 299 CATATTATGATCCTAAACCCATGGAACGTGAATTCCAAGAGAAGATGATGCAGCAGAAGA 358
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 535 CATCTTATGATCCTAAACCCATGGAACGTCAATTCCAAGAGAAGATGATGCAGCAGAAGA 594
Query 359 AGAAGA---CTGGGCTACTAACC-T-CTTT-T-TTAGGAGGGTGTTGCAGCAGTAAATCA 411
|||||| ||||| |||||| | |||| | || | |||||| |||||||||||||
Sbjct 595 AGAAGAAGTCTGGGATACTAAAAATGCTTTCTCTTTT-ATGGTGTTTCAGCAGTAAATCA 653
Query 412 AACGTTGTTCAGCCTTTACCGATGCGAAACCGAAACTGGCATGTCCCATCAAAGTTTGAG 471
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AAAGTTGTTCAGCCTTTACCGATGCGAAACCGAAACTGGCATGTCCCATCAAAGTTTGAG 713
Query 472 AATGGTCCTCCTGTTTTTGGCCTTCCTTTTGGCAATTCTACTACATCATCGCAGTTGCGG 531
|||| |||||||| |||||| ||| |||||||||||||| ||||||||||||
Sbjct 714 AATGTTCCTCCTGGCTTTGGC-TTC--------AATTCTACTACATCGTCGCAGTTGCGG 764
Query 532 CCTCCGCATCCAATGATGCCCTATCCACCAACGATGCAACCA--A-TGATGCAGCAACAA 588
||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 765 CCTCCGCATCCAATGATGCCCTATCCACCAATGATGCAACCACCAATGATGCAGCAACAA 824
Query 589 CCACCACCTATGATGATGCAGCAACAACCAC 619
| ||||| || ||||||||||||||| |||
Sbjct 825 CGACCAC-TA--ATGATGCAGCAACAAGCAC 852
Score = 69.4 bits (37), Expect = 5e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 665 CAATGCCACCTAATGTTAACATGTTCCAGCCAGCACCCCA 704
||||||||||||||||||||||||||||| ||||||||||
Sbjct 859 CAATGCCACCTAATGTTAACATGTTCCAGTCAGCACCCCA 898
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 625 ATGATGCAGCAACAAGCACAAGTTCCAATG 654
||||||||||||||||||||||||||||||
Sbjct 834 ATGATGCAGCAACAAGCACAAGTTCCAATG 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5