BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912885
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30590.1 | Symbols: | RNA polymerase I specific transcripti... 2543 0.0
AT2G34750.1 | Symbols: | RNA polymerase I specific transcripti... 1218 0.0
AT2G39240.1 | Symbols: | RNA polymerase I specific transcripti... 678 0.0
> AT1G30590.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr1:10835794-10840005
REVERSE LENGTH=2303
Length=2303
Score = 2543 bits (1377), Expect = 0.0
Identities = 1696/1845 (92%), Gaps = 42/1845 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGCAGAAGAAGTTCCGAGTGTTCCTTTCAGCTCAAATGCAATGGACAACGCTGAT 60
||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 307 ATGGGAGCAGAAGAATTTCCGAGTGTTCCGTTCAACTCAAATGCAATGGACAACGCTGAA 366
Query 61 TATAGCGACACAGAATTGGTGCATGCCGTTAGAAAGGCCCTTGCATCTGTCCAAAATGGG 120
|||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 367 TATACCGACACAGATTTGGTGTTTGCCGTTAGAAAGGCCCTTGCATCTGTCCAAAATGGA 426
Query 121 GATACCGACGATTATAGTCAGCTTAAAACAGTGATGTGCCATAAAGACTATTCTGATTTC 180
|||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||
Sbjct 427 GATACCGACGATTATAGTCAGCTTAAAACAGTGATGTGCCTTACAGAAGACGCTGATTTC 486
Query 181 GATGCAGTGGCA-AACTATGAGACAGTCTTGAGAATTCTATCAGTTTCTGTTGCTTGCAT 239
|||||||||||| | || |||||||||||||| || |||||||||||| |||||||| ||
Sbjct 487 GATGCAGTGGCACAGCT-TGAGACAGTCTTGAAAAGTCTATCAGTTTCCGTTGCTTGGAT 545
Query 240 AAATGTAGTTCACCATGAAGATCTTCTTAGAACTATTTTTGGGATGAGCTTGTGGTTTCA 299
| || ||||||| ||| ||||||||||| | | | | ||||||||||||| |||
Sbjct 546 AGATTTAGTTCATCATAAAGATCTTCTT-G-A--A-----GCTATGAGCTTGTGGTATCA 596
Query 300 -A---A-A-ACCTAATGTCATGGATGCATCGGTGGGCCTAATCATATCACTGGCCGCTAC 353
| | | ||||| ||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 597 TAGTCACAGACCTAGTGTAATGGATGCATTGGTGGACCTAATCATATCACTGGCCGCTAC 656
Query 354 TAGTGGAAAATACCTGGATCCTTGTTTGAATATGCTCATAAGTAATTTCA-TACAACCTA 412
|||||||||||| |||||||||||||||||||||||| |||| ||||||| | |||||||
Sbjct 657 TAGTGGAAAATATCTGGATCCTTGTTTGAATATGCTCGTAAGAAATTTCAGT-CAACCTA 715
Query 413 CTTTTAAGCATGAAGTTTCACAAACCCAGTTAGTCAAAAAGAAGCAGGAAGTTCTTCCAC 472
||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 716 CTTTTAAGCATAAAGTTTCACAAACCCAATTAGTCAAAAAGATGCAGGAAGTTCATCCAC 775
Query 473 GGGTGCATGTAGCCCTTCACAAGATTTCTTATTTAATTCCTCTTGCTCCCTCGAAATTAG 532
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 776 GGGTGCATGCAGCCCTTCACAAGATTTCTTATTTAATTCCTCTTGCTCCCTGGAATTTAG 835
Query 533 TGCCTATACTTGCGCAGAACATGCCTAGTATTTACGAAAAGGGCCCTTCTGTAGTGACAT 592
|| ||||||||||||||||||||| || ||| || |||||| ||||||| |||||||||
Sbjct 836 TGTCTATACTTGCGCAGAACATGCGTAAAATTGACAAAAAGGACCCTTCTATAGTGACAT 895
Query 593 ATGTGGATAACCTGTTGAAGTTGGAGAATAGCTCAATCGGAAAAGTTGTTGGCAGTGTGA 652
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||
Sbjct 896 ATGTGGATAACCTGTTGAGGTTGGAGAATAGCTCAATCGGAGAAGTTGTTGGCAGCGTGA 955
Query 653 TTCTCATGATGGTGATGGAGAGGATGCGAGATTTGGATTTGGAAATTGGATGCGATGATA 712
|||| |||||||| ||||||||||||| |||||| ||||||| || | || ||||
Sbjct 956 TTCTTATGATGGTAATGGAGAGGATGCTAGATTTAGATTTGGTAA---G-TG-GATG--- 1007
Query 713 TTCTCCAAGATGACTCTAATAGAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAA 772
| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1008 ---T----GATGACTCTAATGGAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAA 1060
Query 773 GCACTATGAATGAAGGAGACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACATCAGATG 832
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1061 GCACTATGAATGAAGGAGACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACTTCAGGTG 1120
Query 833 GAAATGTGGTCTCTGAGCTGTTGGACAAATTGATGGTCCTAACTTTTGATCATCTTGAAA 892
||||||| |||||||| |||||||||||||||||||||||| |||| ||||||| |||
Sbjct 1121 GAAATGTAGTCTCTGAACTGTTGGACAAATTGATGGTCCTATTTTTTCATCATCTAGAAT 1180
Query 893 CCTGTCAAAACTCTGGTCGTTTGGATGAGGTATTTGAAATCCTCTTTCAGTCGTTTGAGA 952
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1181 CCTGTCAAAACTCTGATCGTTTGGATGAGGTATTTGAAATCCTCTTTAAGTCGTTCGAGA 1240
Query 953 ATTATATTCTGAACACATACAAATCAAAATTTTCACAGTTTCTGATGTTCTATGCGTGCT 1012
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1241 ACTATATTCTGAACACATACAAAACAAAATTTTCACAGTTTCTGATGTTCTATGCATGCT 1300
Query 1013 CACTAGATCCTGAATATTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCTCT 1072
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 CACTAGATCCTGAAAATTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCTCT 1360
Query 1073 CCAGAAACAAACCTCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTACTTGT 1132
|||| |||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1361 CCAGCAACACATGTCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTATTTGT 1420
Query 1133 CTCGTGGAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 CTCGTGGAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACG 1480
Query 1193 ATTGTGCGGAATATTGCAGAACATGCAATGATGATGTGAAGCCAGAAGCACATCAAGTGT 1252
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AGTGTGCGGAATATTGCGGAACATGCAATGATGATGTGAAGCCAGAAGCACATCAAGTGT 1540
Query 1253 TCTATTCTGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCAGA-TGAGATCCATACTG 1311
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1541 TCTATTCTGGATGTCAGGCAATCTTGTATGTGCTATGCTTCC-GAATGAGATCCATAGTG 1599
Query 1312 GACATTCCTCGCTTTCAGTTGCAGCTCACATCGTTGGAGTCAATTTTATCTCACAAACTA 1371
|| |||||||||||||| | |||| | | ||| |||||||||||||||||||||||||||
Sbjct 1600 GAGATTCCTCGCTTTCAATCGCAGTTTAGATCATTGGAGTCAATTTTATCTCACAAACTA 1659
Query 1372 AACCCACTGA-TGGTGTGCCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGC 1430
|||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 AACCCACT-ACTGGTGTGTCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGC 1718
Query 1431 TGGTGGTCTGTTCATTGTCTCAGAAGCCTTCATTTTCGATGACCTACACGAGTCTGAGCT 1490
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1719 TGGTGGTCTGTTCATTGTCTCAGAATCCTTCATTTTCGATGACCTACACGAGTCTGAGCT 1778
Query 1491 CTCTTGTGCTTTTGGTGGCTTTGAAAGGCTTGACACATTCTTCCCGTTTGACCCGTGCTT 1550
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 CTCTCGTGCTTTTGGTGGCTTTGAAAGGCTTGACACATTCTTCCCGTTTGACCCGTGCTT 1838
Query 1551 GTTGAAAATGTCTAGCAGCTATATCTCCCCGAACTTCAACTTCTGGTTAATGGAGAAAAC 1610
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1839 GTTGAAAATGTCTAGCAGCTACATCTCCCCGAACTTCAACTTCTGGTCAATGGTGAAAAC 1898
Query 1611 GACTTATG-AGGAAGATGATGACGATGAGCTTTGTGATGAGGTCATAGTGAATGGAGATG 1669
|||||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1899 GACTTATGGAG-AAGATGGTGACGAAGAGCTTTGTGATGAGGTCATAGTGAATGGAGATG 1957
Query 1670 CAGACAGTGAGGAGGA-CTGTGACGATGACGTGGAACTTGATAGCGAGATGAATAAGATG 1728
||||||||| |||||| | |||||||||||| ||||||||||| |||||||| | ||||
Sbjct 1958 CAGACAGTGCGGAGGAACC-TGACGATGACGTTGAACTTGATAGTGAGATGAACACGATG 2016
Query 1729 TCTGTAACTCCGAAACACTCTTTCATGCAAGAAACGGAGAGGCTCTTGAAGATGCCTTCA 1788
||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2017 TCTACAACTCCGAAACACTCTTTCATGCGAGAAACAGAGAGGCTCTTGAAGATGCCTTCA 2076
Query 1789 AGAATCAGACCATCCACTAGTCCTCCTGAATCCTTCTTAATCTAA 1833
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 AGAATCAGACCATCCACTAGTCCTCCTGAATCCTTCTTAATCTAA 2121
> AT2G34750.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr2:14660299-14664268
REVERSE LENGTH=2186
Length=2186
Score = 1218 bits (659), Expect = 0.0
Identities = 1459/1832 (80%), Gaps = 107/1832 (6%)
Strand=Plus/Plus
Query 47 TGGACAACGCTGATTATAGC-GACACAG-AATTGGTGCATG-CCGTTAGAAAGGCCCTTG 103
||||||||| ||||| || | || || | |||||||||| | |||| |||||||| |||
Sbjct 253 TGGACAACGTTGATT-TATCTGATAC-GCAATTGGTGCA-GACCGTGAGAAAGGCTCTTA 309
Query 104 CATCTGTCCAAAA-TGGGGA-TACCGACGATTATAGT--CA-GCTT-AAAACAGT-G-AT 155
||||||| ||||| |||||| | | ||| ||||||| | | || | | | | |
Sbjct 310 CATCTGT-CAAAACTGGGGACT-CAGACCTTTATAGTGAGATGGTTGGAGTTA-TGGCAC 366
Query 156 GTGCCAT-AAAGACTATT-CTGATTTC-GATGCAGTGGC-AAACTATGAGACAGTCTTGA 211
| | ||| ||||| | || || | | |||| |||||| | || ||||||||||||||
Sbjct 367 GGGACATCAAAGAAT-TTAAGGA-TCCTGATGTAGTGGCGCAGCT-TGAGACAGTCTTGA 423
Query 212 GAA-TTCTATCAGTTTCTGTTGCTTGCATAAATGTAGTTCACCATGAAGATCTTCTTAGA 270
|| |||||||| |||| ||||||||| |||| |||||||| || | ||||||
Sbjct 424 -AAGCTCTATCAGGCGCTGTGGCTTGCATAGATGTCCTTCACCATCAAAAGCTTCTTTCT 482
Query 271 ACTATTTTTGGGATGAGCTTGTGGTTTCAAAAACCTAATGTCATGGATGCATCGGTGGGC 330
| ||||| | |||| |||||| || | |||| ||||||||||||||| |||| |
Sbjct 483 GCGCTTTTTCGAATGAAATTGTGGGACCACAGACCTGATGTCATGGATGCATTGGTGAAC 542
Query 331 CTAATCATATCACTGGCCGCT-ACTAGTGGAAAATACCTGGATC-CTTGTTTGAATATGC 388
|| ||||||||||||| | | ||||||||||| || | || | ||||| |||||||||
Sbjct 543 CTTGTCATATCACTGGCTG-TCACTAGTGGAAAGTATTTAGA-CTCTTGTCTGAATATGC 600
Query 389 TCATAAGTAATTTCATACAACCTACTT--TTA-AGCATGAA-GTTTCACAAACCCAGT-T 443
|| |||| || ||| | | |||| ||| || | || || |||| || ||| || |
Sbjct 601 TCGTAAGCAACTTCGTTCCACCTCCTTGGGTAGTGAAT-AACCTTTCGCACTCCC-GTAT 658
Query 444 AGTCAAA-AAGAAGCA-GGAAGTTCTTCCACGGGTGCATGTAGCCCTTCACAAGATTTCT 501
| | ||| |||||| | || |||||| | |||||||||| ||| |||| || || ||
Sbjct 659 ACT-AAACAAGAAG-ATAGACGTTCTTTCTCGGGTGCATGCAGCGCTTCTGAAAATCTC- 715
Query 502 TA-TTTAATTCCTCTTGCTCCCTCGAA-ATTAGTGCCTATACT-TGCGCAG-AACATG-C 556
|| ||| |||||||| ||||||| || ||||||||| || || | | ||| || ||| |
Sbjct 716 TATTTTGGTTCCTCTTACTCCCTC-AAGATTAGTGCCAATGCTCTTC-CAGCAA-ATGCC 772
Query 557 CTAGTATTTACGAAAAGGGCCCTTCTG-TAGTGACATATGTGGATAACCTGTTGAAGTTG 615
| || || || |||||| || ||| | |||||| ||||||||| | | | || || |||
Sbjct 773 CAAG-ATGCACAAAAAGGACCATTC-GATAGTGATATATGTGGAGAGCTTATTAAAATTG 830
Query 616 GAGAATAGCTCAATCGGAAAAGTTGTTGGCAGTGTGATTC-TCATGATGGTGATGGAGAG 674
|||||||||||||| || |||||| |||||| |||||| | | ||||||||||||||
Sbjct 831 GAGAATAGCTCAATAGGGCAAGTTGGTGGCAGCATGATTCTTGGT-ATGGTGATGGAGAG 889
Query 675 GATGCGAGATTTGGATTTGGAAATTGGATGCGATGATATTCTC-CAAGATGACTCTAATA 733
| |||||||||||||||| || |||| ||| |||||||||| | ||||||||||||| ||
Sbjct 890 GCTGCGAGATTTGGATTTAGAGATTGAATGGGATGATATTC-CACAAGATGACTCTAGTA 948
Query 734 GAGGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAAGCACTATGAATGAAGGAGACG 793
|||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||
Sbjct 949 GAGGAATGTTTGATATGGAACTTGAAGATGCAGCTGAAGGCACTATGAATGATGGAGACG 1008
Query 794 AGTTTCCAGTGGGGGCTCTAAAACAAAATACATCAGATGGAAATGTGGTCTCTGAGCTGT 853
|| |||||||||| ||||||| || ||||||||||||||| | | |||||| || |||
Sbjct 1009 AGCTTCCAGTGGGACCTCTAAAGCAGGATACATCAGATGGAAGTATAGTCTCTAAGTTGT 1068
Query 854 TGGACAAATTGATGGTCCTAACTTTTGATCATCTTGAAACCTGTCAAAACTC-TGGTCGT 912
||||||||||||||||| || ||||||| ||||||||| |||||||||| | |||||||
Sbjct 1069 TGGACAAATTGATGGTCGTAGCTTTTGAGCATCTTGAATCCTGTCAAAA-TGATGGTCGT 1127
Query 913 TTGGATGAGGTATTTGAAATCCTCTTTCA-GTCGTTTGAGAA-TTATATTCTGAACACAT 970
|||||| |||| ||||||| |||||| || ||| ||||| || || |||||||||||||
Sbjct 1128 TTGGATCAGGTGTTTGAAAGCCTCTT-CAAGTCATTTGAAAACTTC-ATTCTGAACACAT 1185
Query 971 ACAAATCAAAATTTTCACAGTTTCTGATGTTCTATGCGTGCTCACTAGATCCTGAATATT 1030
||||||||||||| | ||||||||||| |||||||| |||||||| ||||||||| |||
Sbjct 1186 ACAAATCAAAATTCACCCAGTTTCTGATATTCTATGCCTGCTCACTGGATCCTGAAAATT 1245
Query 1031 GTGGTGTGAGATTTGCCAGTAAGCT-GTTGGACATATATCTCTCCAGAAACAAACCTCG- 1088
||||||||| |||||| |||||||| || ||| || | ||||||||| ||||| | | |
Sbjct 1246 GTGGTGTGAAATTTGCTAGTAAGCTAGT-GGAGATTTTTCTCTCCAGCAACAAGCAT-GT 1303
Query 1089 A-CTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTACTTGTCTCGTGGAAAGTTTT 1147
| || ||||| |||||||| ||||||||||| ||||||| |||| |||||||||||||||
Sbjct 1304 AGCT-ACTAGAATGAGTGCGGTGGCTTATCTTGCTAGCTTCTTGGCTCGTGGAAAGTTTT 1362
Query 1148 TGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACGATTGTGCGGAATATT 1207
|||||| ||| ||||||||||||||||||||||| ||| | || || |||| || || |
Sbjct 1363 TGCCTGTTTCCTTTGTGGCTAGCATGTTGAAAAGGTTGATAGATGAGTGTGTGGGTTACT 1422
Query 1208 GCAGAACATGCAATGATGATG-TGAAGCCAGAAGCACATCA-AGTGTTCTAT-TCTGGAT 1264
||||||| |||||||||||| | | ||| ||||||||||| | | |||| | || ||||
Sbjct 1423 GCAGAACTTGCAATGATGATACT-AGGCCTGAAGCACATCAGATT-TTCT-TCTCCGGAT 1479
Query 1265 GTCAGGCAATCTTGTATGTGCTATGCTTCCAG-ATGAGATCCATACT-GGACATTCCTCG 1322
||||||||||| |||||||||| |||||| || ||||||||||| || ||| |||||||
Sbjct 1480 GTCAGGCAATCATGTATGTGCTCTGCTTC-AGGATGAGATCCAT-CTTGGATGTTCCTCG 1537
Query 1323 CTTTCAGTTGCAGCTCACATCGTTGGAGTCAATTTTA-TCTCACAAACTAAACCCACTGA 1381
||||| || ||||| ||| | ||||||||||| ||| | ||||||||||||||| |||
Sbjct 1538 CTTTCGGTCCCAGCTTACACCATTGGAGTCAATATTAATG-CACAAACTAAACCCATTGA 1596
Query 1382 TGGTGTGCCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGCTGGTGGTCTGT 1441
|||| ||||||||||| |||||| | |||||||||| |||||| |||| ||||||||||
Sbjct 1597 TGGTATGCCTTCCATCGGTAGTTGCGGAGTTCCTTAGACAAGCTAAAGAAGGTGGTCTGT 1656
Query 1442 TCATTGTCTCAGAAGCCTTCATTTTCGATGACCTACACGAGTCTGAGCTCTCTTGTGCTT 1501
|||| |||||||| | ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1657 TCATCGTCTCAGACTCGTTCATTTTCGATGACCTACTTGAGTCTGAGCTTTCCCGTGCTT 1716
Query 1502 TTGGTGGCTTTGAAAGGCTTGACACATTCTTCCCGTTTGACCCGTGCTTGTTGAAAATG- 1560
|||| || ||||| ||||| || ||||||||||| |||||||| |||||| | |||||
Sbjct 1717 TTGGCGGGTTTGAGAGGCTGGATACATTCTTCCCATTTGACCCTTGCTTGCT-AAAATCC 1775
Query 1561 TCTAGCAGCTATATCTCCCCGAACTTCAACTTCTGGTTAATGGAGAAAACGACTTATGAG 1620
|| | ||||| ||||||||| || |||| || ||||| ||||| ||| |||| |||||
Sbjct 1776 TCAAACAGCTTTATCTCCCCAAATTTCATCTACTGGTCAATGGTCAAAGCGACCTATGAC 1835
Query 1621 GAAGATGATGACGATGAGCTTTGTGATGAGGTCATAGTGAATGGAGATGCAG-ACAGTGA 1679
||||||||||| ||| | | || |||||| || ||||||||||||| || |||||||
Sbjct 1836 GAAGATGATGATGATAA--TGA-TGCTGAGGTGATCGTGAATGGAGATG-AGGACAGTGA 1891
Query 1680 GGAGGACTGTGACGATGACGTGGAACTTGAT-AGCGAGATGAATAAGATGTCTGTAACTC 1738
|| || || |||| | | || | |||||| | || |||| |||||||| |||| |
Sbjct 1892 CGAAGA-TG--ACGAGG-C-TG-ATCTTGATTA-CGCCCTGAACAAGATGTCCATAACGC 1944
Query 1739 CGAAACACTCTTTCATG--CAAGA---AACG-GAGAGGCTCTTGAAGA-TGCCTTCAAGA 1791
| || |||||||||| | ||||| || | || || || || |||| ||||||| ||
Sbjct 1945 CTAAGCACTCTTTCAAGAACAAGATGGAAAGAGACAGACTTTT-AAGAATGCCTTCCAGG 2003
Query 1792 ATCAGACCATCCACTAGTCCTCCTGAATCCTT 1823
|||||||| || || |||||| ||||||||
Sbjct 2004 ATCAGACCGTCAACGAGTCCT---GAATCCTT 2032
> AT2G39240.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr2:16384786-16387827
REVERSE LENGTH=1722
Length=1722
Score = 678 bits (367), Expect = 0.0
Identities = 575/673 (85%), Gaps = 24/673 (4%)
Strand=Plus/Plus
Query 851 TGTTGGACAAATTGATGGTCCTAA-CTTTTGATCATCTTGAAA-CCTGTCAAAACT-CTG 907
|||||||| | || ||||| | || ||||| |||||||| ||| | |||||| | | |||
Sbjct 788 TGTTGGACGATTTAATGGT-CGAATCTTTTAATCATCTT-AAATCTTGTCAAGA-TGCTG 844
Query 908 GTCGTTTGGATGAGGTATTTG-AAATCCTCTTTC-AGTCGTTTGAGAA-TTATATTCTGA 964
||||| |||||||||| |||| |||| ||| ||| ||||||||||||| ||| |||||||
Sbjct 845 GTCGTCTGGATGAGGTGTTTGAAAAT-CTC-TTCGAGTCGTTTGAGAACTTA-ATTCTGA 901
Query 965 ACACATACAAATCAAAATTTTCACAGTTTCTGATGTTCTATGCGTGCTCACTAGATCCTG 1024
|||| | |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 902 ACACGCAAAAATTAAAATTTTCACAGTTCCTGATGTTCTATGCGTGCTCACTAGATCCTG 961
Query 1025 AATATTGTGGTGTGA-GATTTGCCAGTAAGCTGTTGGACATATATCTCTCCAGAAACAA- 1082
|| |||||||||||| | |||||||||||||||||||| | || ||||||||| |||||
Sbjct 962 AAAATTGTGGTGTGAAG-TTTGCCAGTAAGCTGTTGGAAAAATTTCTCTCCAGCAACAAC 1020
Query 1083 ACCTCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTACTTGTCTCGTGGAAA 1142
| || | ||||||||| || ||||||| | |||||||||||||||||| |||||| |||
Sbjct 1021 AA-TCAAGTTACTAGGACGAATGCAGTGACATATCTAGCTAGCTACTTGGCTCGTGCAAA 1079
Query 1143 GTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGACGATTGTGCGGA 1202
|||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct 1080 TTTTTTGTCTGCTTCTTTTGTGGCTAGCATGTTAAAAAGATTGGTGGATGAGTGTGCTGA 1139
Query 1203 ATATTGCAGAACATGCAATGATGATG-TGAAGCCAGAAGCACATCAAGTGTTCTATTCTG 1261
||||||||||||||||||||||||| | | ||| |||| ||| ||||| |||||||| |
Sbjct 1140 TTATTGCAGAACATGCAATGATGATGCT-AGGCCTGAAGTACACCAAGTTTTCTATTCAG 1198
Query 1262 GATGTCAGGCAATCTTGTATGTGCTATGCTTCCAGA-TGAGATCCATACTGGACATTCCT 1320
|||||||||| || || || ||||||||||| | || ||||||| || || || |||||
Sbjct 1199 GATGTCAGGCCATTTTATACGTGCTATGCTTTC-GAATGAGATCAATCCTAGAGGTTCCT 1257
Query 1321 CGCTTTCAGTTGCAGCTCACATCGTTGGAGTCAATTTTATCTCACAAACTAAACCCACTG 1380
| ||| || | ||||| ||| | ||||||||| |||| |||||||||||| |||| |||
Sbjct 1258 CACTTCCAATCACAGCTTACACCATTGGAGTCAGTTTTGTCTCACAAACTAGACCCGCTG 1317
Query 1381 ATGGTGTGCCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGCCAAAGC-TGGTGGTCT 1439
| ||| |||||| ||||||||||||| |||||||||| |||||||||||| || ||| ||
Sbjct 1318 AGGGTATGCCTTTCATCTGTAGTTTCTGAGTTCCTTATACAAGCCAAAGCCTG-TGGCCT 1376
Query 1440 GTTCATTGTCTCAGAAGCCTTCATTTTCGATGACCTA-CACGAGTCTGAGCTCTCTTGTG 1498
|||||||||||| || ||||||||||| ||||||||| | |||||||||||||||| |||
Sbjct 1377 GTTCATTGTCTCCGACGCCTTCATTTTTGATGACCTATC-CGAGTCTGAGCTCTCTCGTG 1435
Query 1499 CTTTTGGTGGCTT 1511
|||| ||||||||
Sbjct 1436 CTTTAGGTGGCTT 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90712384815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5