BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912893
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30660.1 | Symbols: | nucleic acid binding;nucleic acid bin... 992 0.0
AT1G30680.1 | Symbols: | toprim domain-containing protein | ch... 859 0.0
> AT1G30660.1 | Symbols: | nucleic acid binding;nucleic acid binding
| chr1:10876853-10879017 FORWARD LENGTH=1014
Length=1014
Score = 992 bits (537), Expect = 0.0
Identities = 640/690 (93%), Gaps = 6/690 (1%)
Strand=Plus/Plus
Query 38 TTGGTCATGAAGATGAAGCAGGCAAG-AGAGCTGTTCTATCTAAATTAGTGACATTGTTG 96
||| || |||||| |||||||||||| || | |||||| |||||||||||||| ||| ||
Sbjct 59 TTGTTCCTGAAGAAGAAGCAGGCAAGAAG-GTTGTTCTGTCTAAATTAGTGACTTTGATG 117
Query 97 CGAAAATTGGCGGAACAAGGAATCGATGCTCAAAGCTGTCCCCCAGGACAACGTAGTGGC 156
|| |||||| | |||||||||||||||||||||| |||||| |||||| ||||||| ||
Sbjct 118 CGTAAATTGTCAGAACAAGGAATCGATGCTCAAAACTGTCCTCCAGGAGTACGTAGTTGC 177
Query 157 TTGATATGTCC-AACGTGTGAAGGTGGAGACTCTGGAGaaaaaaaCTTGACTCTTTACAT 215
||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 178 TTGATATGTCCGAA-GTGTGAAGTTGGAGACTCTGGAGAAAAAAGCTTGACTCTTTACAT 236
Query 216 ATACCCTGATGGTTCGTCAGCTAAGTGGAGTTGCAGGAGGAAGTGTGGTTTAAAAGGTGT 275
|||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||
Sbjct 237 ATACCCTGATGGTTCGTCAGCTAAATGGACTTGCAGGAGGAAGTGTGGGTTAAAAGGTGT 296
Query 276 AGTACAGGTGGATGGTAAGTTGGTATATAAAGATCCAATAGAGAAGGTTGAAAGAAAAAT 335
| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 297 ACTACAGGTGGATGGTAAGTTGGTATCTAAAGATCCAATAGGGAAGGTTGAAAGAAAAAT 356
Query 336 TACGGTGGAGGGTATAAAGCTAGAACCACTCTGTGATGAGATTCAAGATTTTTTCGCTGC 395
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 357 TACGGTGGAGAGTATAAAGCTAGAACCTCTCTGTGATGAGATTCAAGATTTTTTTGCTGC 416
Query 396 AAGAGCGATTTCAGTGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGA 455
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 417 AAGAGCGATTTCAGGGAAAACACTCGAGAGAAATCGAGTTATGCAGAAAAGAATAGATGA 476
Query 456 CGAGATTATGATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCG 515
||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 CGAGATTGTGATTGCTTTTACGTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCG 536
Query 516 GTCTCTAACTAAGAAGTTCTTTCAGGAAAGGAATACACGGAAGATCTTATATGGTCTTGA 575
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct 537 ATCTCTAACTAAGAAGTTCGTTCAGGAAAGGAATACACGGAAGATCTTGTATGGGCTTGA 596
Query 576 TGACATAGAA-AAAGCATCTGAAATCATTATAGTTGAAGGGGAAATAGATAAACTTGCAA 634
|||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 TGACATAGAAGAAA-CATCTGAAATCATTATAGTTGAAGGGGAACCAGATAAACTTGCAA 655
Query 635 TGGAAGAGGCTGGTTTTCTCAGTTGTGTGTCTGTTGCTGATGGAGCTCCAGTGACGGTTT 694
||||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 656 TGGAAGAGGCTGGTTTTTTCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGAGACGGTTT 715
Query 695 CATCAAAGGAAATCCCATCTGAATCCAAGG 724
| ||||||||||| ||||||||||||||||
Sbjct 716 CTTCAAAGGAAATTCCATCTGAATCCAAGG 745
Score = 372 bits (201), Expect = 4e-102
Identities = 217/225 (96%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 721 AAGGTGTCTCGGATTGTTCTTGCTACTGACGGAGATGGACCTGGTCAAGCTCTGGCGGAA 780
|||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 790 AAGGCGTCTCGGATTGTTATTGCTACTGACGGAGATGGACCTGGTCAAGCTCTAGCGGAA 849
Query 781 GAACTTGCACGGCGTTTGGGGAAAGAAAGATGCTGGCTTGTCAAATGGCCGAAGAAAAGT 840
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 850 GAACTTGCACGGCGTTTGGGGAAAGAAAGATGTTGGCTTGTCAAATGGCCGAAGAAAAGT 909
Query 841 GAGGATGAATATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCAATTACTC 900
|| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 910 GAAGATGAACATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCATTTACTC 969
Query 901 AAGGAAGCTATTCTAAATGCTGAGCCATACCCTTTGAAGTCATGA 945
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 970 AAGGAAGCTATTCTAAATGCTGAGCCTTACCCTTTGAAGTCATGA 1014
> AT1G30680.1 | Symbols: | toprim domain-containing protein |
chr1:10881597-10886425 FORWARD LENGTH=2563
Length=2563
Score = 859 bits (465), Expect = 0.0
Identities = 614/686 (90%), Gaps = 9/686 (1%)
Strand=Plus/Plus
Query 45 TGAAGAT-GAAGCAGGCAAGAGAGCTGTTCTATCTAAATTAGTGACATTGTTGCGAAAAT 103
||||| | ||||||| ||||| | ||||||||||| ||||||||| ||| ||| ||||
Sbjct 356 TGAAG-TAGAAGCAGATAAGAGGGTTGTTCTATCTAGATTAGTGACTTTGAGGCGTAAAT 414
Query 104 TGGCGGAACAAGGAATCGATGCTCAAAGCTGTCCCCCAGGACAACGTAGTGGCTTGATAT 163
|||||||||| ||| | |||||| ||| ||| ||||||||||||| ||||||||||||||
Sbjct 415 TGGCGGAACAGGGAGTTGATGCTGAAAACTGCCCCCCAGGACAACATAGTGGCTTGATAT 474
Query 164 GTCCAACGTGTGAAGGTGGAGACTCTGGAGaaaaaaaCTTGACTCTTTACATATACCCTG 223
|||| ||||||||||||||| ||||||||||||||| |||| |||||| ||| |||||
Sbjct 475 GTCCGACGTGTGAAGGTGGAAACTCTGGAGAAAAAAGCTTGTCTCTTTTTATAGCCCCTG 534
Query 224 ATGGTTCGTCAGCTA-AGTGGAGTTGC---AGGAGGAAGTGTGGTTTAAAAGGTGTAGTA 279
||||||| ||||||| | |||| |||| ||| |||||||||| |||||||||| |||
Sbjct 535 ATGGTTCATCAGCTACA-TGGAATTGCTTTAGGGGGAAGTGTGGGTTAAAAGGTGGAGTT 593
Query 280 CAGGTGGATGGTAAGTTGGTATATAAAGATCCAATAGAGAAGGTTGAAAGAAAAATTACG 339
| || ||||||| ||||| || | ||||| |||||||||||||||||||||||||||
Sbjct 594 CGGGCGGATGGTGGGTTGGCATCTGCTGATCCTATAGAGAAGGTTGAAAGAAAAATTACG 653
Query 340 GTGGAGGGTATAAAGCTAGAACCACTCTGTGATGAGATTCAAGATTTTTTCGCTGCAAGA 399
|||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 654 GTGGAGGGTATAGAGCTAGAACCTCTCTGTGATGAGATTCAAGATTATTTCGCTGCAAGA 713
Query 400 GCGATTTCA-GTGAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGA 458
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GCGATTTCACG-GAAAACACTCGAGAGAAATCGGGTTATGCAGAAAAGAATAGGTGACGA 772
Query 459 GATTATGATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 518
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GATTGTAATTGCGTTTACTTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGGTC 832
Query 519 TCTAACTAAGAAGTTCTTTCAGGAAAGGAATACACGGAAGATCTTATATGGTCTTGATGA 578
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 833 TCTAACTAAGATGTTCTTTCAGGAAAGGAAGACACGGAGGATCTTATATGGTCTTGATGA 892
Query 579 CATAGAAAAAGCATCTGAAATCATTATAGTTGAAGGGGAAATAGATAAACTTGCAATGGA 638
|||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 893 CATAGAAAAAACATCTGAAGTCATTATAGTTGAAGGGGAGATAGATAAACTTGCAATGGA 952
Query 639 AGAGGCTGGTTTTCTCAGTTGTGTGTCTGTTGCTGATGGAGCTCCAGTGACGGTTTCATC 698
||| ||||||||||||| |||||| || ||| ||||||||||||||| || |||||| ||
Sbjct 953 AGAAGCTGGTTTTCTCAATTGTGTATCCGTTCCTGATGGAGCTCCAGCGAAGGTTTCTTC 1012
Query 699 AAAGGAAATCCCATCTGAATCCAAGG 724
|||||||||||||| ||| |||||
Sbjct 1013 GAAGGAAATCCCATCGGAAGACAAGG 1038
Score = 305 bits (165), Expect = 4e-82
Identities = 197/213 (92%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 721 AAGGTGTCTCGGATTGTTCTTGCTACTGACGGAGATGGACCTGGTCAAGCTCTGGCGGAA 780
|||| |||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1083 AAGGCGTCTCGAATTGTTATTGCTACTGACGGAGATGGACCTGGTCAAGCTATGGCGGAA 1142
Query 781 GAACTTGCACGGCGTTTGGGGAAAGAAAGATGCTGGCTTGTCAAATGGCCGAAGAAAAGT 840
||| |||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||
Sbjct 1143 GAAATTGCACGGCGTTTGGGTAAAGAAAGATGTTGGCGTGTCAAGTGGCCGAAGAAAAGT 1202
Query 841 GAGGATGAATATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCAATTACTC 900
||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1203 GAGGATGAACATTTTAAAGATGCAAACGAGGTTCTTATGTCTAAGGGACCTCATTTACTC 1262
Query 901 AAGGAAGCTATTCTAAATGCTGAGCCATACCCT 933
|||||||||||| || ||||||||||||| |||
Sbjct 1263 AAGGAAGCTATTTTAGATGCTGAGCCATATCCT 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5