BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912921

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00820.1 | Symbols: RPS19 | ribosomal protein S19 | chrC:840...   261    1e-69


> ATCG00820.1 | Symbols: RPS19 | ribosomal protein S19 | chrC:84005-84283 
REVERSE LENGTH=279
Length=279

 Score =  261 bits (141),  Expect = 1e-69
 Identities = 147/150 (98%), Gaps = 0/150 (0%)
 Strand=Plus/Plus

Query  1    ATGATTGGCCATACTATCGCTATTCATAATGGAAGGGAACACCTACCCGTTTATATAATA  60
            |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  130  ATGATTGGCCATACGATCGCTATTCATAATGGAAGGGAACACTTACCCGTTTATATAATA  189

Query  61   GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  190  GATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACAT  249

Query  121  GCGAAAAATGATAATAGATCTCGTCGTTAA  150
            || |||||||||||||||||||||||||||
Sbjct  250  GCCAAAAATGATAATAGATCTCGTCGTTAA  279



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6388271577


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5