BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912936

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20680.1 | Symbols:  | Protein of unknown function (DUF833) ...   422    2e-117
  AT1G20740.1 | Symbols:  | Protein of unknown function (DUF833) ...   110    2e-23 


> AT1G20680.1 | Symbols:  | Protein of unknown function (DUF833) 
| chr1:7169402-7170796 FORWARD LENGTH=1010
Length=1010

 Score =  422 bits (228),  Expect = 2e-117
 Identities = 308/347 (89%), Gaps = 4/347 (1%)
 Strand=Plus/Plus

Query  88   GGCAGCATGAGTCCAGACCAGTTTGCCAACGAACTGAGACTGCATGAAAAGAAGAGTAAT  147
            |||| |||||||||||| ||||||||||||||| ||| | ||||||||||| ||| ||||
Sbjct  280  GGCAACATGAGTCCAGAGCAGTTTGCCAACGAAGTGAAAGTGCATGAAAAGGAGACTAAT  339

Query  148  GAAAGGCATGTCTATAGTCTTATCGTTGCAGACATGACTTCGAGTTCAATGGTTCATATC  207
            |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  340  GAAAGGCATGCCTATAGTCTTGTCGTTGCAGACATGACTTCGAGTTCAATGGTTCATATC  399

Query  208  CTGAAACCCTTGGATACTAAGTCGGATGTCATAATAGAGACCGTTCCGTTTGGTGTGCAT  267
            |||||||||| |||||||||||| |||||| | |||||||| ||||||||||||||||||
Sbjct  400  CTGAAACCCTCGGATACTAAGTCTGATGTCGTGATAGAGACTGTTCCGTTTGGTGTGCAT  459

Query  268  ACACTTTCTTCTTACGAGGGCCTAGATTCCACAGAATCTTCCAGGGATTCACGCCTAAGA  327
            ||||||||||||||||| || || ||||| ||||| ||| ||||||||| || ||| |||
Sbjct  460  ACACTTTCTTCTTACGAAGGTCTCGATTCTACAGATTCTGCCAGGGATTTACTCCTGAGA  519

Query  328  GGCCTT-TTTAGCCAGATGATTGTTGATTTGGGAAACAATGAAAAACCACAGATGGAGGG  386
             || || |||| ||||||| ||| | |||||||||||  | || ||| ||||||||||| 
Sbjct  520  CGC-TTGTTTACCCAGATGGTTGGTAATTTGGGAAACGTTCAACAACGACAGATGGAGGA  578

Query  387  GATTGCTGGGAGGTTTATGTATGATGCTGCAGG-AGGAAGAGACGCG  432
            |||||||||||||||||||||||||||| || | |||||||||||||
Sbjct  579  GATTGCTGGGAGGTTTATGTATGATGCT-CAAGCAGGAAGAGACGCG  624


 Score =  178 bits (96),  Expect = 5e-44
 Identities = 119/130 (92%), Gaps = 2/130 (2%)
 Strand=Plus/Plus

Query  442  CAACGCTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACCA-AGGAAGTGAT  500
            ||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct  673  CAACGCTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACTAGAG-AAGTGAT  731

Query  501  GCTCTTTGAGAGGTACATGGAGGAGAATGGTGCATGGACCAAGCGCCACTTCGCTTTCAA  560
            ||||||||||| |||||||||| ||||||||||||||| || |  | |||||||||||||
Sbjct  732  GCTCTTTGAGAAGTACATGGAGCAGAATGGTGCATGGAACACGAACAACTTCGCTTTCAA  791

Query  561  TATCCAGTAG  570
             |||||||||
Sbjct  792  CATCCAGTAG  801


> AT1G20740.1 | Symbols:  | Protein of unknown function (DUF833) 
| chr1:7200394-7201538 FORWARD LENGTH=801
Length=801

 Score =  110 bits (59),  Expect = 2e-23
 Identities = 73/80 (91%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  443  AACGCTTTGGAACAACAAGTACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGATGC  502
            ||| || |||||||| || ||||||||||||||||||||||||||||||||||||| || 
Sbjct  671  AACACTATGGAACAAGAATTACGACAGCATTGGTTGTGAAACGCACCAAGGAAGTGTTGT  730

Query  503  TCTTTGAGAGGTACATGGAG  522
            ||||||||||||||| ||||
Sbjct  731  TCTTTGAGAGGTACAGGGAG  750



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5