BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912946

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30972.1 | Symbols:  | Plant thionin family protein | chr1:1...   230    5e-60


> AT1G30972.1 | Symbols:  | Plant thionin family protein | chr1:11044671-11045466 
FORWARD LENGTH=796
Length=796

 Score =  230 bits (124),  Expect = 5e-60
 Identities = 176/201 (88%), Gaps = 4/201 (2%)
 Strand=Plus/Plus

Query  1    ATGGGTGCTAAATTGAATTCAATGATTTTATTAATGTTCGTGGTAACAATGGTAATAGCA  60
            ||||||||||||| ||||||||||||| || |  |||| ||||| |||||||| ||||||
Sbjct  1    ATGGGTGCTAAATGGAATTCAATGATTATAATGGTGTTTGTGGTGACAATGGTTATAGCA  60

Query  61   ATGGAAAGTGTCAATGGAGAGACAAAAGCTCAATGCCATGAAGATTGCATTCTAGGTTGT  120
            ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGGAAAATGTCAATGGAGAGACGAAAGCTCAATGCCATGAAGATTGCATTCTAGGTTGT  120

Query  121  GCCACCACCGGA-GCACGTCCGAACATGTGCCTCCAGAGTTGTTACCGTAGATG-CCAAG  178
            |||||||| ||| | |  ||||| || |||||| |||| |||||||||| |||| ||  |
Sbjct  121  GCCACCACAGGAAGAAT-TCCGATCACGTGCCTTCAGAATTGTTACCGTCGATGTCCC-G  178

Query  179  GCAAACCTGGTCGTGCATTAG  199
            |||||||| ||||| ||||||
Sbjct  179  GCAAACCTCGTCGTACATTAG  199



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9406352637


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5