BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912947

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30990.1 | Symbols:  | Polyketide cyclase/dehydrase and lipi...   518    2e-146


> AT1G30990.1 | Symbols:  | Polyketide cyclase/dehydrase and lipid 
transport superfamily protein | chr1:11052130-11053063 FORWARD 
LENGTH=459
Length=459

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 408/468 (87%), Gaps = 15/468 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGATGTCGGGAACATACATGACGGACGTTCCTCTGAAGGGATCGGCGGAGAAACAC  60
            |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct  1    ATGGCGATGTCGGGAACATACATGACGGACGTGCCTCTGAATGGATCGGCCGAGAAACAC  60

Query  61   TACAAAAGGTGGAGTAGCGAGAACCATCTCGTCCCTGATGCCATCGGCCACCTCATCCAT  120
            |||||   |||||||||||||| ||||| | |||||||  | ||||||||||||||||| 
Sbjct  61   TACAAGTTGTGGAGTAGCGAGACCCATCGCATCCCTGACACTATCGGCCACCTCATCCAA  120

Query  121  GGTGTCACCCTCCACGACGGTGATTGGGACTCTCACGGCGCCATCAAGAGC-TGGAAGTA  179
            ||||||| ||||||||| || |||||||||||||||||| ||||||||| | ||||||||
Sbjct  121  GGTGTCATCCTCCACGAGGGCGATTGGGACTCTCACGGCTCCATCAAGA-CATGGAAGTA  179

Query  180  CACTCTTGATGGGAAGGAGCAAGTGTTTAAGGAGAGAATAGAGATGGACGATGAGAAGAT  239
            || |||||||||||||||| ||| |||||||||||||| |||||| ||||| ||||||||
Sbjct  180  CAATCTTGATGGGAAGGAGGAAGAGTTTAAGGAGAGAACAGAGATAGACGAAGAGAAGAT  239

Query  240  GACGGTGGCGTTCAATGCGATCGATGGTCAAGTCATGGAGGAGCTTAAGGTGTATATAGC  299
            | ||||| || | | |||| |||||||||||||||||||||||||||||||||||||  |
Sbjct  240  GGCGGTGACGATGACTGCGCTCGATGGTCAAGTCATGGAGGAGCTTAAGGTGTATATCCC  299

Query  300  AAA-CTTACAATTCATCCCCG-GTTCCCAAAATGGCT-GTGTTTGCAAAGTTAGTGTGAT  356
            ||| || |||||||||||||| || ||||||||| || |||| |||||||||||||||| 
Sbjct  300  AAATCT-ACAATTCATCCCCGAGT-CCCAAAATG-CTTGTGTCTGCAAAGTTAGTGTGAA  356

Query  357  TTGGGAGAAACGCACCCAAGACTCCCCAGAGCCCACCATGTTC-ATGAAGTTTCTCGAGA  415
             ||||||||||||||| |||||||   ||| ||| ||| |||  || |||||||||||||
Sbjct  357  GTGGGAGAAACGCACCGAAGACTC---AGAACCCGCCAAGTTTTAT-AAGTTTCTCGAGA  412

Query  416  AGATGGTTGCTGACAT-GGATGACCATATCCTCCAAAACGAGGAATGA  462
            ||||| |||||||  | ||||||||| || ||||| ||| ||||||||
Sbjct  413  AGATGATTGCTGAT-TCGGATGACCACATTCTCCATAACCAGGAATGA  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5